Use of an informed search space maximizes confidence of site-specific assignment of glycoprotein glycosylation

Algorithms and design strategies towards automated glycoproteomics analysis

(2016) Han Hu et al.   MASS SPECTROMETRY REVIEWS

Integrated Omics and Computational Glycobiology Reveal Structural Basis for Influenza A Virus Glycan Microheterogeneity and Host Interactions

(2016) Kshitij Khatri et al.   MOLECULAR & CELLULAR PROTEOMICS

MAGIC: An Automated N-Linked Glycoprotein Identification Tool Using a Y1-Ion Pattern Matching Algorithm and in Silico MS2 Approach

(2015) Ke-Shiuan Lynn et al.   ANALYTICAL CHEMISTRY

A review of methods for interpretation of glycopeptide tandem mass spectral data

(2015) Han Hu et al.   GLYCOCONJUGATE JOURNAL

Confident Assignment of Site-Specific Glycosylation in Complex Glycoproteins in a Single Step

(2014) Kshitij Khatri et al.   JOURNAL OF PROTEOME RESEARCH

GlycoMaster DB: Software To Assist the Automated Identification of N-Linked Glycopeptides by Tandem Mass Spectrometry

(2014) Lin He et al.   JOURNAL OF PROTEOME RESEARCH

Automated Assignments of N- and O-Site Specific Glycosylation with Extensive Glycan Heterogeneity of Glycoprotein Mixtures

(2013) John S. Strum et al.   ANALYTICAL CHEMISTRY

Serum Proteomics in Biomedical Research: A Systematic Review

(2013) Ai-hua Zhang et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Sweet-Heart — An integrated suite of enabling computational tools for automated MS2/MS3 sequencing and identification of glycopeptides

(2013) Sz-Wei Wu et al.   Journal of Proteomics

Interlaboratory Study on Differential Analysis of Protein Glycosylation by Mass Spectrometry: The ABRF Glycoprotein Research Multi-Institutional Study 2012

(2013) Nancy Leymarie et al.   MOLECULAR & CELLULAR PROTEOMICS

Automated glycopeptide analysis--review of current state and future directions

(2012) D. C. Dallas et al.   BRIEFINGS IN BIOINFORMATICS

GlycReSoft: A Software Package for Automated Recognition of Glycans from LC/MS Data

(2012) Evan Maxwell et al.   PLoS One

An unbiased approach for analysis of protein glycosylation and application to influenza vaccine hemagglutinin

(2011) Yanming An et al.   ANALYTICAL BIOCHEMISTRY

Structural Insights into Differences in Drug-binding Selectivity between Two Forms of Human α1-Acid Glycoprotein Genetic Variants, the A and F1*S Forms

(2011) Koji Nishi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Combining High-Energy C-Trap Dissociation and Electron Transfer Dissociation for Protein O-GlcNAc Modification Site Assignment

(2011) Peng Zhao et al.   JOURNAL OF PROTEOME RESEARCH

Mass spectrometric glycan rearrangements

(2011) Manfred Wuhrer et al.   MASS SPECTROMETRY REVIEWS

PEAKS DB:De NovoSequencing Assisted Database Search for Sensitive and Accurate Peptide Identification

(2011) Jing Zhang et al.   MOLECULAR & CELLULAR PROTEOMICS

Improving confidence in detection and characterization of protein N-glycosylation sites and microheterogeneity

(2011) Anoop M. Mayampurath et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Simultaneous Glycan-Peptide Characterization Using Hydrophilic Interaction Chromatography and Parallel Fragmentation by CID, Higher Energy Collisional Dissociation, and Electron Transfer Dissociation MS Applied to theN-Linked Glycoproteome ofCampylobacter jejuni

(2010) Nichollas E. Scott et al.   MOLECULAR & CELLULAR PROTEOMICS

Mapping site-specific protein N-glycosylations through liquid chromatography/mass spectrometry and targeted tandem mass spectrometry

(2010) Yin Wu et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

Improved Hydrophilic Interaction Chromatography LC/MS of Heparinoids Using a Chip with Postcolumn Makeup Flow

(2009) Gregory O. Staples et al.   ANALYTICAL CHEMISTRY

Decon2LS: An open-source software package for automated processing and visualization of high resolution mass spectrometry data

(2009) Navdeep Jaitly et al.   BMC BIOINFORMATICS

Quantification of post-translationally modified peptides of bovine α-crystallin using tandem mass tags and electron transfer dissociation

(2009) Rosa I. Viner et al.   Journal of Proteomics

Quality by design for biopharmaceuticals

(2009) Anurag S Rathore et al.   NATURE BIOTECHNOLOGY

Identification of protein O-GlcNAcylation sites using electron transfer dissociation mass spectrometry on native peptides

(2009) R. J. Chalkley et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

N-Glycoproteomics – An automated workflow approach

(2008) Sakari Joenväärä et al.   GLYCOBIOLOGY

When can glycopeptides be assigned based solely on high-resolution mass spectrometry data?

(2008) Heather Desaire et al.   INTERNATIONAL JOURNAL OF MASS SPECTROMETRY

Assigning Significance to Peptides Identified by Tandem Mass Spectrometry Using Decoy Databases

(2007) Lukas Käll et al.   JOURNAL OF PROTEOME RESEARCH