Network reconstruction from infection cascades

Characterizing and Discovering Spatiotemporal Social Contact Patterns for Healthcare

(2017) Bo Yang et al.   IEEE TRANSACTIONS ON PATTERN ANALYSIS AND MACHINE INTELLIGENCE

Reconstruction of stochastic temporal networks through diffusive arrival times

(2017) Xun Li et al.   Nature Communications

Model-free inference of direct network interactions from nonlinear collective dynamics

(2017) Jose Casadiego et al.   Nature Communications

UniProt: the universal protein knowledgebase

(2016)   NUCLEIC ACIDS RESEARCH

Data based identification and prediction of nonlinear and complex dynamical systems

(2016) Wen-Xu Wang et al.   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

Identifying Spatial Invasion of Pandemics on Metapopulation Networks Via Anatomizing Arrival History

(2016) Jian-Bo Wang et al.   IEEE Transactions on Cybernetics

Revealing networks from dynamics: an introduction

(2014) Marc Timme et al.   Journal of Physics A-Mathematical and Theoretical

The patient-zero problem with noisy observations

(2014) Fabrizio Altarelli et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

Inferring the origin of an epidemic with a dynamic message-passing algorithm

(2014) Andrey Y. Lokhov et al.   PHYSICAL REVIEW E

Bayesian Inference of Epidemics on Networks via Belief Propagation

(2014) Fabrizio Altarelli et al.   PHYSICAL REVIEW LETTERS

Inferring Epidemic Network Topology from Surveillance Data

(2014) Xiang Wan et al.   PLoS One

Reconstructing propagation networks with natural diversity and identifying hidden sources

(2014) Zhesi Shen et al.   Nature Communications

Optimizing spread dynamics on graphs by message passing

(2013) F Altarelli et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

The MIntAct project—IntAct as a common curation platform for 11 molecular interaction databases

(2013) Sandra Orchard et al.   NUCLEIC ACIDS RESEARCH

Large deviations of cascade processes on graphs

(2013) F. Altarelli et al.   PHYSICAL REVIEW E

Molecular interaction databases

(2012) Sandra Orchard   PROTEOMICS

Inference for discretely observed stochastic kinetic networks with applications to epidemic modeling

(2011) Boseung Choi et al.   BIOSTATISTICS

What's in a crowd? Analysis of face-to-face behavioral networks

(2010) Lorenzo Isella et al.   JOURNAL OF THEORETICAL BIOLOGY

Message passing approach for general epidemic models

(2010) Brian Karrer et al.   PHYSICAL REVIEW E

Information dynamics shape the sexual networks of Internet-mediated prostitution

(2010) L. E. C. Rocha et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A high-resolution human contact network for infectious disease transmission

(2010) M. Salathe et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Efficient Network Reconstruction from Dynamical Cascades Identifies Small-World Topology of Neuronal Avalanches

(2009) Sinisa Pajevic et al.   PLoS Computational Biology

Tracing information flow on a global scale using Internet chain-letter data

(2008) D. Liben-Nowell et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA