4.4 Article

Theoretical investigation on -spacer effect of the D--A organic dyes for dye-sensitized solar cell applications: a DFT and TD-BHandH study

Journal

JOURNAL OF MOLECULAR MODELING
Volume 25, Issue 4, Pages -

Publisher

SPRINGER
DOI: 10.1007/s00894-019-3963-1

Keywords

D-pi-a structure; pi-Spacers effect; BHandH; Hole and electron transport

Funding

  1. Volubilis Program [Ma/11/248]
  2. Bitlis Eren University

Ask authors/readers for more resources

In this paper, we present a series of sensitizers to shed light on the influence of -spacers on the performance of dye-sensitized solar cells. We have accurately calculated key properties in energy conversion, including sunlight absorption, electron injection, electron/hole reorganization energy, ionization potential (IP) and electronic affinity (EA). We chose a series of donor--acceptor dyes based on methyl-indole-carbazole as the electron donor group and cyano-acrylic acid as an acceptor with various -conjugated systems. The results obtained show that, with incorporation of the thieno(3,4-b)pyrazine in the two -spacer parts, D4 may be the best candidate among the dyes studied, due to its many advantages such as low gap energy, red-shift absorption spectra, largeG(Inj), low hole/electron reorganization energies, low IP and high EA, which indicate its better optoelectronic properties, which present more balanced transport rates and provide good injection ability.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.4
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Biochemistry & Molecular Biology

3D-QSAR modeling and molecular docking studies on a series of 2, 4, 5-trisubstituted imidazole derivatives as CK2 inhibitors

Amina Goudzal, Abdellah El Aissouq, Hicham El Hamdani, El Ghalia Hadaji, Abdelkrim Ouammou, Mohammed Bouachrine

Summary: In this study, a 3D-QSAR analysis was performed on a series of 2, 4, 5-trisubstituted imidazole derivatives to design potent kinase II alpha subunit (CK2) inhibitors. The COMFA and COMSIA models showed excellent performance with high Q(2) and R-2 values. The validity of the models was confirmed through various validation tests. The study's findings provide useful theoretical references for future experimental studies.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2023)

Article Chemistry, Multidisciplinary

2-Oxoquinoline Arylaminothiazole Derivatives in Identifying Novel Potential Anticancer Agents by Applying 3D-QSAR, Docking, and Molecular Dynamics Simulation Studies

Reda El-Mernissi, Khalil El Khatabi, Ayoub Khaldan, Larbi ElMchichi, Md Shahinozzaman, Mohammed Aziz Ajana, Tahar Lakhlifi, Mohammed Bouachrine

Summary: Tubulin is essential for cellular processes and has been identified as a potential therapeutic target for cancer. This study used 3D-QSAR analysis to understand the pharmacological characteristics of a series of 2-oxoquinoline arylaminothiazole derivatives as tubulin inhibitors. The analysis identified crucial interactions for improving inhibitory activity and four novel inhibitors were designed based on the validated 3D-QSAR models. Docking and molecular dynamics simulation confirmed the activity and stability of the designed compounds.

JOURNAL OF THE MEXICAN CHEMICAL SOCIETY (2022)

Article Engineering, Electrical & Electronic

Drafting novel N-phenylnaphthalen-1-amine-based dyes for designing highly proficient organic solar cells: theoretical investigation of the π-linker influence on photovoltaic properties

R. Kacimi, J. Iqbal, L. Louazri, A. Alioui, M. Hamidi, L. Bejjit, M. N. Bennani, M. Bouachrine

Summary: Four novel donor-pi-acceptor (D-pi-A) type dyes based on phenylnaphthalen-1-amine as the donor and cyanoacrylic acid as the acceptor unit were theoretically assessed. The optoelectronic and photovoltaic parameters of these dyes were investigated, showing excellent sensitization properties with narrow bandgap, efficient photo-induced electron transfer, low exciton binding energy, and redshift.

OPTICAL AND QUANTUM ELECTRONICS (2022)

Article Pharmacology & Pharmacy

Molecular docking, molecular dynamics simulation, and ADMET analysis of levamisole derivatives against the SARS-CoV-2 main protease (MPro)

Khalil El Khatabi, Ilham Aanouz, Marwa Alaqarbeh, Mohammed Aziz Ajana, Tahar Lakhifi, Mohammed Bouachrine

Summary: This study identified the potential of molecule N degrees 6 from levamisole derivatives as a novel inhibitor to stop the spread of SARS-CoV-2, based on molecular docking and MD simulation results.

BIOIMPACTS (2022)

Article Biochemistry & Molecular Biology

Development of novel monoamine oxidase B (MAO-B) inhibitors by combined application of docking-based alignment, 3D-QSAR, ADMET prediction, molecular dynamics simulation, and MM_GBSA binding free energy

Abdellah El Aissouq, Oussama Chedadi, Mohammed Bouachrine, Abdelkrim Ouammou, Fouad Khalil

Summary: In this study, various computational methods were utilized to analyze a novel series of MAO-B inhibitors, including docking-based alignment, 3D-QSAR, ADMET prediction, molecular dynamics simulation, and MM_GBSA binding free energy. The 3D-QSAR models revealed the importance of steric, electrostatic, and H-bond acceptor fields on the inhibitory activity of MAO-B. Based on the 3D-QSAR model, new MAO-B inhibitors were predicted and their pharmacokinetic characteristics were evaluated using in silico ADMET prediction. The MD simulations demonstrated the stability and compactness of unsaturated ketone derivatives, and the binding free energy analysis indicated a more stable compound (T1) compared to the highest active compound in the dataset.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2023)

Article Chemistry, Physical

Novel antiproliferative inhibitors from salicylamide derivatives with dipeptide moieties using 3D-QSAR, molecular docking, molecular dynamic simulation and ADMET studies

Esslali Soukaina, Nabil Al-Zaqri, Ismail Warad, Hamza Ichou, Koubi Yassine, Farhate Guenoun, Mohammed Bouachrine

Summary: Currently, the development of new anticancer drugs is an urgent unmet need due to the inability to permanently cure most cancers. Computational chemistry can be used to address this problem by playing a sensitive role in rational drug development and design. In this study, various in silico approaches were performed to investigate a database of 28 salicylamide compounds with dipeptide moieties as inhibitors of antiproliferative activity. The established CoMSIA/SH model demonstrated high reliability and validity, providing important information for improving the inhibitory activity and proposing new antiproliferative inhibitors.

JOURNAL OF MOLECULAR STRUCTURE (2023)

Article Chemistry, Multidisciplinary

Computational and Retrosynthetic Investigation of Isoxazole-Bearing Chalcones as Antioxidant Activate Compounds

Youness Moukhliss, Yassine Koubi, Marwa Alaqarbeh, Hafiz Muzzammel Rehman, Hamid Maghat, Abdelouahid Sbai, Mohammed Bouachrine, Tahar Lakhlifi

Summary: This study applied the 3D-QSAR method to analyze a set of isoxazole-based compounds and proposed five new drug candidates (Pr1-Pr5). The interactions between the drug candidates and the antioxidant receptor 1HD2 were studied using molecular docking. ADME analysis showed that these drug candidates are orally bioavailable with high gastrointestinal absorption and good permeability. Molecular dynamics simulation confirmed the stability of the complexes formed between the drug candidates and 1HD2. A synthesis pathway for the drug candidates was proposed using the retrosynthesis approach. This study provides valuable information on the antioxidant activity of isoxazole-based compounds.

CHEMISTRYSELECT (2023)

Article Biochemistry & Molecular Biology

Identification of novel curcumin derivatives against pancreatic cancer: a comprehensive approach integrating 3D-QSAR pharmacophore modeling, virtual screening, and molecular dynamics simulations

Narimene Chahbaoui, Saida Khamouli, Marwa Alaqarbeh, Salah Belaidi, Leena Sinha, Samir Chtita, Mohammed Bouachrine

Summary: This study explores the potential of curcumin derivatives as pancreatic cancer therapy targets using computational approaches, and demonstrates the feasibility and effectiveness of this treatment method through modeling and experiments.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2023)

Article Chemistry, Multidisciplinary

Identification of a Potential Thiazole Inhibitor Against Biofilms by 3D QSAR, Molecular Docking, DFT Analysis, MM-PBSA Binding Energy Calculations, and Molecular Dynamics Simulation

H. Hajji, A. Sbai, H. Maghat, M. Bouachrine, T. Lakhlifi, K. Tabti

Summary: In this study, computational approaches were used to investigate the application of thiazole derivatives as biofilm inhibitors. The constructed CoMFA and CoMSIA models showed strong predictive ability, with significant Q(2), R-2, R-pred(2), and ESS values. External validation confirmed the effectiveness of the CoMSIA model in explaining the inhibitory activity against biofilms. Molecular docking and ADMET studies provided insights into the interaction mode and pharmacokinetics of the compounds. Molecular dynamics simulations and DFT analysis further enhanced the understanding of the binding stability and energy profiles of selected compounds. These findings have the potential to contribute to the discovery of new and more effective thiazole-based antibiofilm inhibitors.

PHYSICAL CHEMISTRY RESEARCH (2023)

Article Chemistry, Multidisciplinary

Prediction of Novel TRPV1 Antagonist: A Combination of 3D-QSAR, Molecular Docking, MD Simulations and ADMET Prediction

A. Toughzaoui, Ou Chedadi, A. El Aissouq, Y. El Ouardi, M. Bouachrine, A. Ouammou

Summary: In this study, 3D-QSAR, molecular docking, and molecular dynamics (MD) simulation were used to investigate the structure-activity relationship of novel TRPV1 antagonists. The results showed a good correlation and explained the key factors affecting the biological activity. The pharmacokinetic properties of predicted compounds were analyzed using drug-likeness and ADMET prediction. MD simulation of the best-docked compounds confirmed their conformational features and stability.

PHYSICAL CHEMISTRY RESEARCH (2023)

Article Chemistry, Applied

Designing of Novel Quinolines Derivatives as Hepatocellular Carcinoma Inhibitors by Using In silico Approaches

Reda El-Mernissi, Khalil El Khatabi, Ayoub Khaldan, Soukaina Bouamrane, Larbi El Mchichi, Mohammed Aziz Ajana, Tahar Lakhlifi, Mohammed Bouachrine

Summary: In this study, a series of quinoline derivatives were designed as therapeutic drugs for hepatocellular carcinoma, and a trustworthy model was obtained using the 3D-QSAR method. The results of the study showed that the hydrophobic field contributed the most to the drug activity, and three quinoline derivatives were proposed as potent inhibitors. Molecular docking and ADME evaluation demonstrated good stability and pharmacokinetic characteristics of these compounds.

BIOINTERFACE RESEARCH IN APPLIED CHEMISTRY (2023)

Article Chemistry, Applied

New Organic Dyes with Low Bandgap Based on Heterocyclic Compounds for Dye-sensitized Solar Cells Applications

Marzouk Raftani, Tayeb Abram, Ahmed Azaid, Rchid Kacimi, Mohammed Naciri Bennani, Mohammed Bouachrine

Summary: In this paper, a theoretical study on four organic dyes with the structure D-pi-A based on triphenylamine was conducted. The properties of these dyes were calculated and discussed, including their ground state geometric and electronic properties, as well as optical properties. The results indicate that these dyes can be considered as favorable candidates for efficient DSSC sensitizers.

BIOINTERFACE RESEARCH IN APPLIED CHEMISTRY (2023)

Article Chemistry, Applied

Chemical Composition and In Silico Acetylcholinesterase Inhibitory Activity of Essential Oils of Six Apiaceae Species from South-East Morocco

Omayma Bouzekri, Sabah Elgamouz, Khalil El Khatabi, Ali Amechrouq, Mohammed Aziz Ajana, Mohammed Bouachrine, Tahar Lakhlifi, Mostafa El Idrissi, M'barek Choukrad

Summary: This study investigates the chemical composition of essential oils extracted from the seeds of six wild Moroccan Apiaceae species and evaluates their potential as Acetylcholinesterase inhibitors. The results suggest that the essential oil of C. cyminum may serve as a novel alternative source of acetylcholinesterase inhibitor.

BIOINTERFACE RESEARCH IN APPLIED CHEMISTRY (2023)

Article Chemistry, Multidisciplinary

Computational study of quinoline-based thiadiazole compounds as potential antileishmanial inhibitors

Ayoub Khaldan, Soukaina Bouamrane, Reda El-mernissi, Marwa Alaqarbeh, Halima Hajji, Nada Alsakhen, Hamid Maghat, Mohammed Aziz Ajana, Abdelouahid Sbai, Mohammed Bouachrine, Tahar Lakhlifi

Summary: This study examined twenty quinoline-based thiadiazole compounds and identified two potential antileishmanial agents, Y1 and Y2. Molecular docking and molecular dynamics simulations confirmed the interaction modes and stability between these compounds and the receptor. These findings provide a basis for further research and development of highly inhibitory antileishmanial drugs.

NEW JOURNAL OF CHEMISTRY (2022)

Article Chemistry, Multidisciplinary

In silico design of new α-glucosidase inhibitors through 3D-QSAR study, molecular docking modeling and ADMET analysis

Ayoub Khaldan, Soukaina Bouamrane, Reda El-mernissi, Hamid Maghat, Mohammed Aziz Ajana, Abdelouahid Sbai, Mohammed Bouachrine, Tahar Lakhlifi

Summary: This study investigated the relationship between the structure of oxindole based oxadiazole molecules and the activity of alpha-glucosidase through 3D-QSAR and molecular docking methods. Two new compounds with significant inhibitory activity were proposed.

MOROCCAN JOURNAL OF CHEMISTRY (2022)

No Data Available