A multi-model framework for the Arabidopsis life cycle

Integrating modelling and phenotyping approaches to identify and screen complex traits: transpiration efficiency in cereals

(2018) K Chenu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Absence of warmth permits epigenetic memory of winter in Arabidopsis

(2018) Jo Hepworth et al.   Nature Communications

Practical steps to digital organism models, from laboratory model species to ‘Crops in silico

(2018) Andrew J Millar et al.   JOURNAL OF EXPERIMENTAL BOTANY

Chromar, a language of parameterised agents

(2017) Ricardo Honorato-Zimmer et al.   THEORETICAL COMPUTER SCIENCE

Towards a mechanistic foundation of evolutionary theory

(2017) Michael Doebeli et al.   eLife

The Intracellular Dynamics of Circadian Clocks Reach for the Light of Ecology and Evolution

(2016) Andrew J. Millar   Annual Review of Plant Biology

Connecting Biochemical Photosynthesis Models with Crop Models to Support Crop Improvement

(2016) Alex Wu et al.   Frontiers in Plant Science

Modeling the Influence of Genetic and Environmental Variation on the Expression of Plant Life Cycles across Landscapes

(2015) Liana T. Burghardt et al.   AMERICAN NATURALIST

Quantitative and logic modelling of molecular and gene networks

(2015) Nicolas Le Novère   NATURE REVIEWS GENETICS

Plants in silico : why, why now and what?-an integrative platform for plant systems biology research

(2015) Xin-Guang Zhu et al.   PLANT CELL AND ENVIRONMENT

Mechanistic links between cellular trade-offs, gene expression, and growth

(2015) Andrea Y. Weiße et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Applying developmental threshold models to evolutionary ecology

(2015) Kathleen Donohue et al.   TRENDS IN ECOLOGY & EVOLUTION

Flowering time and seed dormancy control use external coincidence to generate life history strategy

(2015) Vicki Springthorpe et al.   eLife

Photosynthetic capacity of the inflorescence is a major contributor to daily-C-gain and the responsiveness of growth to elevated CO2 in Arabidopsis thaliana with repressed expression of mitochondrial-pyruvate-dehydrogenase-kinase

(2014) Evangelos D. Leonardos et al.   ENVIRONMENTAL AND EXPERIMENTAL BOTANY

Can current crop models be used in the phenotyping era for predicting the genetic variability of yield of plants subjected to drought or high temperature?

(2014) Boris Parent et al.   JOURNAL OF EXPERIMENTAL BOTANY

Mathematical Models Light Up Plant Signaling

(2014) Y. H. Chew et al.   PLANT CELL

Multiscale digitalArabidopsispredicts individual organ and whole-organism growth

(2014) Yin Hoon Chew et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Modelling hormonal response and development

(2014) Ute Voß et al.   TRENDS IN PLANT SCIENCE

Steep, cheap and deep: an ideotype to optimize water and N acquisition by maize root systems

(2013) Jonathan P. Lynch   ANNALS OF BOTANY

Temperature response ofin vivo Rubisco kinetics and mesophyll conductance inArabidopsis thaliana: comparisons toNicotiana tabacum

(2013) BERKLEY WALKER et al.   PLANT CELL AND ENVIRONMENT

Modelling stomatal conductance in response to environmental factors

(2013) THOMAS N. BUCKLEY et al.   PLANT CELL AND ENVIRONMENT

Forecasting flowering phenology under climate warming by modelling the regulatory dynamics of flowering-time genes

(2013) Akiko Satake et al.   Nature Communications

Uncertainty in simulating wheat yields under climate change

(2013) S. Asseng et al.   Nature Climate Change

A Whole-Cell Computational Model Predicts Phenotype from Genotype

(2012) Jonathan R. Karr et al.   CELL

An augmented Arabidopsis phenology model reveals seasonal temperature control of flowering time

(2012) Yin Hoon Chew et al.   NEW PHYTOLOGIST

e-photosynthesis: a comprehensive dynamic mechanistic model of C3 photosynthesis: from light capture to sucrose synthesis

(2012) XIN-GUANG ZHU et al.   PLANT CELL AND ENVIRONMENT

DOG1 expression is predicted by the seed-maturation environment and contributes to geographical variation in germination in Arabidopsis thaliana

(2011) GEORGE C. K. CHIANG et al.   MOLECULAR ECOLOGY

Mechanisms Linking Drought, Hydraulics, Carbon Metabolism, and Vegetation Mortality

(2011) N. G. McDowell   PLANT PHYSIOLOGY

Altitudinal and Climatic Adaptation Is Mediated by Flowering Traits and FRI, FLC, and PHYC Genes in Arabidopsis

(2011) B. Mendez-Vigo et al.   PLANT PHYSIOLOGY

The ERA-Interim reanalysis: configuration and performance of the data assimilation system

(2011) D. P. Dee et al.   QUARTERLY JOURNAL OF THE ROYAL METEOROLOGICAL SOCIETY

Modelling the crop: from system dynamics to systems biology

(2010) Xinyou Yin et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Why does phenology drive species distribution?

(2010) I. Chuine   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Inflorescences contribute more than rosettes to lifetime carbon gain in Arabidopsis thaliana (Brassicaceae)

(2009) Eric J. Earley et al.   AMERICAN JOURNAL OF BOTANY

Prediction of Photoperiodic Regulators from Quantitative Gene Circuit Models

(2009) José Domingo Salazar et al.   CELL

The significance of bolting and floral transitions as indicators of reproductive phase change in Arabidopsis

(2009) Sylvie Pouteau et al.   JOURNAL OF EXPERIMENTAL BOTANY

Effects of Genetic Perturbation on Seasonal Life History Plasticity

(2009) A. M. Wilczek et al.   SCIENCE

A model-based analysis of the dynamics of carbon balance at the whole-plant level inArabidopsis thaliana

(2008) Angélique Christophe et al.   FUNCTIONAL PLANT BIOLOGY

Applying modelling experiences from the past to shape crop systems biology: the need to converge crop physiology and functional genomics

(2008) Xinyou Yin et al.   NEW PHYTOLOGIST