Using WGS to identify antibiotic resistance genes and predict antimicrobial resistance phenotypes in MDR Acinetobacter baumannii in Tanzania

Patterns of infections, aetiological agents and antimicrobial resistance at a tertiary care hospital in northern Tanzania

(2017) Happiness Houka Kumburu et al.   TROPICAL MEDICINE & INTERNATIONAL HEALTH

The emergence of a novel sequence type of MDR Acinetobacter baumannii from the intensive care unit of an Egyptian tertiary care hospital

(2017) Doaa Mohammad Ghaith et al.   Annals of Clinical Microbiology and Antimicrobials

Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads

(2017) Ryan R. Wick et al.   PLoS Computational Biology

Antimicrobial-resistant Pseudomonas aeruginosa and Acinetobacter baumannii From Patients With Hospital-acquired or Ventilator-associated Pneumonia in Vietnam

(2016) Douglas J. Biedenbach et al.   CLINICAL THERAPEUTICS

Wide spread of OXA-23-producing carbapenem-resistant Acinetobacter baumannii belonging to clonal complex II in different hospitals in Lebanon

(2016) Ahmad Al Atrouni et al.   INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES

Co-occurrence of bla NDM-1 with bla OXA-23 or bla OXA-58 in clinical multidrug-resistant Acinetobacter baumannii isolates in Algeria

(2016) Abir Ramoul et al.   Journal of Global Antimicrobial Resistance

Carbapenem resistant Pseudomonas aeruginosa and Acinetobacter baumannii at Mulago Hospital in Kampala, Uganda (2007–2009)

(2016) David P. Kateete et al.   SpringerPlus

Outbreak of drug-resistant Acinetobacter baumannii ST219 caused by oral care using tap water from contaminated hand hygiene sinks as a reservoir

(2015) Kazuo Umezawa et al.   AMERICAN JOURNAL OF INFECTION CONTROL

Bandage: interactive visualization ofde novogenome assemblies: Fig. 1.

(2015) Ryan R. Wick et al.   BIOINFORMATICS

Household antimicrobial self-medication: a systematic review and meta-analysis of the burden, risk factors and outcomes in developing countries

(2015) Moses Ocan et al.   BMC PUBLIC HEALTH

Spread of multidrug-resistant Acinetobacter baumannii and Pseudomonas aeruginosa clones in patients with ventilator-associated pneumonia in an adult intensive care unit at a university hospital

(2015) Sabrina Royer et al.   Brazilian Journal of Infectious Diseases

Molecular Epidemiology of Carbapenem-Resistant Acinetobacter baumannii Isolates in the Gulf Cooperation Council States: Dominance of OXA-23-Type Producers

(2015) Hosam M. Zowawi et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Emergence of Carbapenem-ResistantPseudomonas aeruginosaandAcinetobacter baumanniiClinical Isolates Collected from Some Libyan Hospitals

(2015) Najla Mathlouthi et al.   Microbial Drug Resistance

Characterization of carbapenem-resistant Acinetobacter baumannii isolates in a Chinese teaching hospital

(2015) Yaowen Chang et al.   Frontiers in Microbiology

Prokka: rapid prokaryotic genome annotation

(2014) T. Seemann   BIOINFORMATICS

Self medicated antibiotics in Bangladesh: a cross-sectional health survey conducted in the Rajshahi City

(2014) Mohitosh Biswas et al.   BMC PUBLIC HEALTH

A conjugative plasmid carrying the carbapenem resistance gene blaOXA-23 in AbaR4 in an extensively resistant GC1 Acinetobacter baumannii isolate

(2014) Mohammad Hamidian et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Self-Medication Practices in Mekelle, Ethiopia

(2014) Tadele Eticha et al.   PLoS One

Solving the Problem of Comparing Whole Bacterial Genomes across Different Sequencing Platforms

(2014) Rolf S. Kaas et al.   PLoS One

SRST2: Rapid genomic surveillance for public health and hospital microbiology labs

(2014) Michael Inouye et al.   Genome Medicine

Carbapenemase Genes among Multidrug Resistant Gram Negative Clinical Isolates from a Tertiary Hospital in Mwanza, Tanzania

(2014) Martha F. Mushi et al.   Biomed Research International

Surveillance-response systems: the key to elimination of tropical diseases

(2014) Ernest Tambo et al.   Infectious Diseases of Poverty

Tn6168, a transposon carrying an ISAba1-activated ampC gene and conferring cephalosporin resistance in Acinetobacter baumannii

(2013) Mohammad Hamidian et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Predicting antimicrobial susceptibilities for Escherichia coli and Klebsiella pneumoniae isolates using whole genomic sequence data

(2013) N. Stoesser et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Antimicrobial resistance: a global view from the 2013 World Healthcare-Associated Infections Forum

(2013) Angela Huttner et al.   Antimicrobial Resistance and Infection Control

Using Tablet for visual exploration of second-generation sequencing data

(2012) I. Milne et al.   BRIEFINGS IN BIOINFORMATICS

Global evolution of multidrug-resistant Acinetobacter baumannii clonal lineages

(2012) Raffaele Zarrilli et al.   INTERNATIONAL JOURNAL OF ANTIMICROBIAL AGENTS

Variants of the gentamicin and tobramycin resistance plasmid pRAY are widely distributed in Acinetobacter

(2012) M. Hamidian et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Plasmid-encoded PER-7  -lactamase responsible for ceftazidime resistance in Acinetobacter baumannii isolated in the United Arab Emirates

(2012) A. Opazo et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Antibiotic-resistant Acinetobacter baumannii variants belonging to global clone 1

(2012) V. Post et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Identification of acquired antimicrobial resistance genes

(2012) E. Zankari et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Multilocus Sequence Typing of Total-Genome-Sequenced Bacteria

(2012) M. V. Larsen et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Routine Use of Microbial Whole Genome Sequencing in Diagnostic and Public Health Microbiology

(2012) Claudio U. Köser et al.   PLoS Pathogens

The Acinetobacter baumannii Oxymoron: Commensal Hospital Dweller Turned Pan-Drug-Resistant Menace

(2012) Ignasi Roca et al.   Frontiers in Microbiology

Multidrug-resistantPseudomonas aeruginosaandAcinetobacter baumannii: resistance mechanisms and implications for therapy

(2009) Alexandre P Zavascki et al.   Expert Review of Anti-Infective Therapy