Domestication of previously uncultivated Candidatus Desulforudis audaxviator from a deep aquifer in Siberia sheds light on its physiology and evolution

The biomass and biodiversity of the continental subsurface

(2018) C. Magnabosco et al.   Nature Geoscience

Electrode Potential Dependency of Single-Cell Activity Identifies the Energetics of Slow Microbial Electron Uptake Process

(2018) Xiao Deng et al.   Frontiers in Microbiology

Microbial community assembly and evolution in subseafloor sediment

(2017) Piotr Starnawski et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Scaffolding and completing genome assemblies in real-time with nanopore sequencing

(2017) Minh Duc Cao et al.   Nature Communications

Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems

(2017) Sean P. Jungbluth et al.   PeerJ

Classification of rocks of the Bazhenov Formation

(2016) A.E. Kontorovich et al.   Russian Geology and Geophysics

Characterization and Genome Analysis of the First Facultatively Alkaliphilic Thermodesulfovibrio Isolated from the Deep Terrestrial Subsurface

(2016) Yulia A. Frank et al.   Frontiers in Microbiology

Stable and Variable Parts of Microbial Community in Siberian Deep Subsurface Thermal Aquifer System Revealed in a Long-Term Monitoring Study

(2016) Yulia A. Frank et al.   Frontiers in Microbiology

The Contribution of Genetic Recombination to CRISPR Array Evolution

(2015) Anne Kupczok et al.   Genome Biology and Evolution

Firmicutesis an Important Component of Microbial Communities in Water-Injected and Pristine Oil Reservoirs, Western Siberia, Russia

(2015) Yulia Frank et al.   GEOMICROBIOLOGY JOURNAL

Exploring deep microbial life in coal-bearing sediment down to  2.5 km below the ocean floor

(2015) F. Inagaki et al.   SCIENCE

Single cell genomics indicates horizontal gene transfer and viral infections in a deep subsurface Firmicutes population

(2015) Jessica M. Labonté et al.   Frontiers in Microbiology

RASTtk: A modular and extensible implementation of the RAST algorithm for building custom annotation pipelines and annotating batches of genomes

(2015) Thomas Brettin et al.   Scientific Reports

Survival of Desulfotomaculum spores from estuarine sediments after serial autoclaving and high-temperature exposure

(2014) Louise A O'Sullivan et al.   ISME Journal

Pilon: An Integrated Tool for Comprehensive Microbial Variant Detection and Genome Assembly Improvement

(2014) Bruce J. Walker et al.   PLoS One

Comparisons of the composition and biogeographic distribution of the bacterial communities occupying South African thermal springs with those inhabiting deep subsurface fracture water

(2014) Cara Magnabosco et al.   Frontiers in Microbiology

Characterization of precipitates formed by H2S-producing, Cu-resistant Firmicute isolates of Tissierella from human gut and Desulfosporosinus from mine waste

(2013) Olga P. Ikkert et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Membrane-bound oxygen reductases of the anaerobic sulfate-reducing Desulfovibrio vulgaris Hildenborough: roles in oxygen defence and electron link with periplasmic hydrogen oxidation

(2013) F. Ramel et al.   MICROBIOLOGY-SGM

Intercontinental Dispersal of Bacteria and Archaea by Transpacific Winds

(2012) David J. Smith et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial and functional diversity of a subterrestrial high pH groundwater associated to serpentinization

(2012) Igor Tiago et al.   ENVIRONMENTAL MICROBIOLOGY

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Endospore abundance, microbial growth and necromass turnover in deep sub-seafloor sediment

(2012) Bente Aa. Lomstein et al.   NATURE

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Distribution, formation and regulation of gas vesicles

(2012) Felicitas Pfeifer   NATURE REVIEWS MICROBIOLOGY

Capture of Planktonic Microbial Diversity in Fractures by Long-Term Monitoring of Flowing Boreholes, Evander Basin, South Africa

(2011) Mark M. Davidson et al.   GEOMICROBIOLOGY JOURNAL

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

Biogeography of the Sulfolobus islandicus pan-genome

(2009) M. L. Reno et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Hydrogeological conditions of the Pre-Yenisei petroleum subprovince

(2009) D.A. Novikov et al.   Russian Geology and Geophysics

Precipitation of Cu-Sulfides by Copper-TolerantDesulfovibrioIsolates

(2008) Olia V. Karnachuk et al.   GEOMICROBIOLOGY JOURNAL

Environmental Genomics Reveals a Single-Species Ecosystem Deep Within Earth

(2008) D. Chivian et al.   SCIENCE