A novel long non-coding RNA regulates the immune response in MAC-T cells and contributes to bovine mastitis

The Mammary Microenvironment in Mastitis in Humans, Dairy Ruminants, Rabbits and Rodents: A One Health Focus

(2018) Katherine Hughes et al.   JOURNAL OF MAMMARY GLAND BIOLOGY AND NEOPLASIA

Pathogen-specific responses in the bovine udder. Models and immunoprophylactic concepts

(2018) Wolfram Petzl et al.   RESEARCH IN VETERINARY SCIENCE

Noncoding RNAs: Master Regulators of Inflammatory Signaling

(2018) Chen Li Chew et al.   TRENDS IN MOLECULAR MEDICINE

Identification of the tumour transition states occurring during EMT

(2018) Ievgenia Pastushenko et al.   NATURE

An update on environmental mastitis: Challenging perceptions

(2017) I. C. Klaas et al.   Transboundary and Emerging Diseases

Mining long noncoding RNA in livestock

(2016) R. Weikard et al.   ANIMAL GENETICS

EMT: 2016

(2016) M. Angela Nieto et al.   CELL

Epithelial–mesenchymal transition (EMT) and metastasis: yes, no, maybe?

(2016) Maren Diepenbruck et al.   CURRENT OPINION IN CELL BIOLOGY

Unique features of long non-coding RNA biogenesis and function

(2016) Jeffrey J. Quinn et al.   NATURE REVIEWS GENETICS

Long Noncoding RNA Identification: Comparing Machine Learning Based Tools for Long Noncoding Transcripts Discrimination

(2016) Siyu Han et al.   Biomed Research International

Stromal fibroblasts derived from mammary gland of bovine with mastitis display inflammation-specific changes

(2016) Qing Chen et al.   Scientific Reports

A Cytoplasmic NF-κB Interacting Long Noncoding RNA Blocks IκB Phosphorylation and Suppresses Breast Cancer Metastasis

(2015) Bodu Liu et al.   CANCER CELL

The landscape of long noncoding RNAs in the human transcriptome

(2015) Matthew K Iyer et al.   NATURE GENETICS

Gene expression profiling of bovine mammary gland epithelial cells stimulated with lipoteichoic acid plus peptidoglycan from Staphylococcus aureus

(2014) Jintaek Im et al.   INTERNATIONAL IMMUNOPHARMACOLOGY

Targeting non-coding RNAs with the CRISPR/Cas9 system in human cell lines

(2014) Tsui-Ting Ho et al.   NUCLEIC ACIDS RESEARCH

Escherichia coli- and Staphylococcus aureus-induced mastitis differentially modulate transcriptional responses in neighbouring uninfected bovine mammary gland quarters

(2013) Kirsty Jensen et al.   BMC GENOMICS

lincRNAs: Genomics, Evolution, and Mechanisms

(2013) Igor Ulitsky et al.   CELL

Genome engineering using the CRISPR-Cas9 system

(2013) F Ann Ran et al.   Nature Protocols

Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts

(2013) Liang Sun et al.   NUCLEIC ACIDS RESEARCH

Status of bovine mastitis and associated risk factors in subtropical Jeju Island, South Korea

(2013) Neelesh Sharma et al.   TROPICAL ANIMAL HEALTH AND PRODUCTION

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

(2013) Daehwan Kim et al.   GENOME BIOLOGY

Tumor necrosis factor

(2012) Wen-Ming Chu   CANCER LETTERS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Staphylococcus aureus induces IL-1β expression through the activation of MAP kinases and AP-1, CRE and NF-κB transcription factors in the bovine mammary gland epithelial cells

(2011) Kyoung Whun Kim et al.   COMPARATIVE IMMUNOLOGY MICROBIOLOGY AND INFECTIOUS DISEASES

Long noncoding RNAs and human disease

(2011) Orly Wapinski et al.   TRENDS IN CELL BIOLOGY

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Chromatin signature reveals over a thousand highly conserved large non-coding RNAs in mammals

(2009) Mitchell Guttman et al.   NATURE