Metagenomic analysis reveals distinct patterns of denitrification gene abundance across soil moisture, nitrate gradients

Life on N2O: deciphering the ecophysiology of N2O respiring bacterial communities in a continuous culture

(2018) Monica Conthe et al.   ISME Journal

Genomics and Ecology of Novel N 2 O-Reducing Microorganisms

(2018) Sara Hallin et al.   TRENDS IN MICROBIOLOGY

Plant-Microbe Interactions Drive Denitrification Rates, Dissolved Nitrogen Removal, and the Abundance of Denitrification Genes in Stormwater Control Measures

(2018) Natalie Morse et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Edaphic Conditions Regulate Denitrification Directly and Indirectly by Altering Denitrifier Abundance in Wetlands along the Han River, China

(2017) Ziqian Xiong et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Phenotypic and genotypic richness of denitrifiers revealed by a novel isolation strategy

(2017) Pawel Lycus et al.   ISME Journal

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

The Gut Microbiota of Healthy Aged Chinese Is Similar to That of the Healthy Young

(2017) Gaorui Bian et al.   mSphere

propr: An R-package for Identifying Proportionally Abundant Features Using Compositional Data Analysis

(2017) Thomas P. Quinn et al.   Scientific Reports

FMAP: Functional Mapping and Analysis Pipeline for metagenomics and metatranscriptomics studies

(2016) Jiwoong Kim et al.   BMC BIOINFORMATICS

Modularity of nitrogen-oxide reducing soil bacteria: linking phenotype to genotype

(2016) Constance A. Roco et al.   ENVIRONMENTAL MICROBIOLOGY

A runoff risk model based on topographic wetness indices and probability distributions of rainfall and soil moisture for central New York agricultural fields

(2016) K. L. Hofmeister et al.   JOURNAL OF SOIL AND WATER CONSERVATION

Microbes as Engines of Ecosystem Function: When Does Community Structure Enhance Predictions of Ecosystem Processes?

(2016) Emily B. Graham et al.   Frontiers in Microbiology

Using a soil topographic index to distribute denitrification fluxes across a northeastern headwater catchment

(2015) Todd R. Anderson et al.   JOURNAL OF HYDROLOGY

Planetary boundaries: Guiding human development on a changing planet

(2015) W. Steffen et al.   SCIENCE

Proportionality: A Valid Alternative to Correlation for Relative Data

(2015) David Lovell et al.   PLoS Computational Biology

Assessing denitrification from seasonally saturated soils in an agricultural landscape: A farm-scale mass-balance approach

(2014) Todd R. Anderson et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

Intergenomic Comparisons Highlight Modularity of the Denitrification Pathway and Underpin the Importance of Community Structure for N2O Emissions

(2014) Daniel R. H. Graf et al.   PLoS One

Microbial functional genes involved in nitrogen fixation, nitrification and denitrification in forest ecosystems

(2014) David J. Levy-Booth et al.   SOIL BIOLOGY & BIOCHEMISTRY

Using observation-level random effects to model overdispersion in count data in ecology and evolution

(2014) Xavier A. Harrison   PeerJ

Functional genes to assess nitrogen cycling and aromatic hydrocarbon degradation: primers and processing matter

(2013) C. Ryan Penton et al.   Frontiers in Microbiology

Unexpected nondenitrifier nitrous oxide reductase gene diversity and abundance in soils

(2012) R. A. Sanford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Differential responses of nirK- and nirS-carrying bacteria to denitrifying conditions in the anoxic rice field soil

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Denitrifying Bacteria Isolated from Terrestrial Subsurface Sediments Exposed to Mixed-Waste Contamination

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Ecological and evolutionary factors underlying global and local assembly of denitrifier communities

(2010) Christopher M Jones et al.   ISME Journal

Nitrous oxide emission at low temperatures from manure-amended soils under corn (Zea mays L.)

(2009) Olga Singurindy et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Challenges to incorporating spatially and temporally explicit phenomena (hotspots and hot moments) in denitrification models

(2009) Peter M. Groffman et al.   BIOGEOCHEMISTRY

A safe operating space for humanity

(2009) Johan Rockström et al.   NATURE

Modeling hydrologic controls on denitrification: sensitivity to parameter uncertainty and landscape representation

(2008) Christina Tague   BIOGEOCHEMISTRY

Transformation of the Nitrogen Cycle: Recent Trends, Questions, and Potential Solutions

(2008) J. N. Galloway et al.   SCIENCE