Whole-genome sequences of multidrug-resistant Escherichia coli in South-Kivu Province, Democratic Republic of Congo: characterization of phylogenomic changes, virulence and resistance genes

Mechanisms of quinolone resistance in Escherichia coli isolated from companion animals, pet-owners, and non-pet-owners

(2017) Yeon Soo Chung et al.   Journal of Veterinary Science

Antibiotic resistance

(2017) Marianne Frieri et al.   Journal of Infection and Public Health

Predictors of blaCTX-M-15 in varieties of Escherichia coli genotypes from humans in community settings in Mwanza, Tanzania

(2016) Stephen E. Mshana et al.   BMC INFECTIOUS DISEASES

Prolonged colonisation withEscherichia coliO25:ST131 versus other extended-spectrum beta-lactamase-producingE. coliin a long-term care facility with high endemic level of rectal colonisation, the Netherlands, 2013 to 2014

(2016) Ilse Overdevest et al.   Eurosurveillance

Utility of Whole-Genome Sequencing of Escherichia coli O157 for Outbreak Detection and Epidemiological Surveillance

(2015) Anne Holmes et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Infections Caused by Resistant Gram-Negative Bacteria: Epidemiology and Management

(2015) Keith S. Kaye et al.   PHARMACOTHERAPY

In SilicoDetection and Typing of Plasmids using PlasmidFinder and Plasmid Multilocus Sequence Typing

(2014) Alessandra Carattoli et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Escherichia coli ST131, an Intriguing Clonal Group

(2014) M.-H. Nicolas-Chanoine et al.   CLINICAL MICROBIOLOGY REVIEWS

Global dissemination of a multidrug resistant Escherichia coli clone

(2014) N. K. Petty et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Molecular Screening of Virulence Genes in Extraintestinal PathogenicEscherichia coliIsolated from Human Blood Culture in Brazil

(2014) Vanessa L. Koga et al.   Biomed Research International

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

Predominance of Klebsiella pneumoniaeST14 carrying CTX-M-15 causing neonatal sepsis in Tanzania

(2013) Stephen E Mshana et al.   BMC INFECTIOUS DISEASES

Plasmids and the spread of resistance

(2013) Alessandra Carattoli   INTERNATIONAL JOURNAL OF MEDICAL MICROBIOLOGY

Genetic support and diversity of acquired extended-spectrum β-lactamases in Gram-negative rods

(2012) Laurent Poirel et al.   INFECTION GENETICS AND EVOLUTION

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

The Binding of Antibiotics in OmpF Porin

(2012) Brigitte K. Ziervogel et al.   STRUCTURE

The ClermontEscherichia coliphylo-typing method revisited: improvement of specificity and detection of new phylo-groups

(2012) Olivier Clermont et al.   Environmental Microbiology Reports

CTX-M Enzymes: Origin and Diffusion

(2012) Rafael Cantón et al.   Frontiers in Microbiology

Multiple ST clonal complexes, with a predominance of ST131, of Escherichia coli harbouring blaCTX-M-15 in a tertiary hospital in Tanzania

(2011) S.E. Mshana et al.   CLINICAL MICROBIOLOGY AND INFECTION

Associations Between Multidrug Resistance, Plasmid Content, and Virulence Potential Among Extraintestinal Pathogenic and Commensal Escherichia coli from Humans and Poultry

(2011) Timothy J. Johnson et al.   Foodborne Pathogens and Disease

The CTX-M Conundrum: Dissemination of Plasmids and Escherichia coli Clones

(2011) Umaer Naseer et al.   Microbial Drug Resistance

Insights into a Multidrug Resistant Escherichia coli Pathogen of the Globally Disseminated ST131 Lineage: Genome Analysis and Virulence Mechanisms

(2011) Makrina Totsika et al.   PLoS One

Escherichia coliSequence Type ST131 as the Major Cause of Serious Multidrug‐ResistantE. coliInfections in the United States

(2010) James R. Johnson et al.   CLINICAL INFECTIOUS DISEASES

Replicon sequence typing of IncF plasmids carrying virulence and resistance determinants

(2010) Laura Villa et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Escherichia coli O25b-ST131: a pandemic, multiresistant, community-associated strain

(2010) B. A. Rogers et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

CTX-M-15-Producing Escherichia coli Clinical Isolates in Cairo (Egypt), Including Isolates of Clonal Complex ST10 and Clones ST131, ST73, and ST405 in Both Community and Hospital Settings

(2010) Nevine Fam et al.   Microbial Drug Resistance

Rapid detection of the O25b-ST131 clone of Escherichia coli encompassing the CTX-M-15-producing strains

(2009) O. Clermont et al.   JOURNAL OF ANTIMICROBIAL CHEMOTHERAPY

Evaluation of Screening Methods To Detect Plasmid-Mediated AmpC in Escherichia coli, Klebsiella pneumoniae, and Proteus mirabilis

(2008) T. Y. Tan et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Phenotypic detection of extended-spectrum β-lactamase production in Enterobacteriaceae: review and bench guide

(2008) L. Drieux et al.   CLINICAL MICROBIOLOGY AND INFECTION

Extended-spectrum β-lactamase-producing Enterobacteriaceae: an emerging public-health concern

(2008) Johann DD Pitout et al.   LANCET INFECTIOUS DISEASES