Genome-wide association study for salinity tolerance at the flowering stage in a panel of rice accessions from Thailand

Genome-wide association reveals novel genomic loci controlling rice grain yield and its component traits under water-deficit stress during the reproductive stage

(2018) Niteen N Kadam et al.   JOURNAL OF EXPERIMENTAL BOTANY

A One-Penny Imputed Genome from Next-Generation Reference Panels

(2018) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genome-wide association studies to identify rice salt-tolerance markers

(2017) Juan Patishtan et al.   PLANT CELL AND ENVIRONMENT

Genome-wide association mapping for phenotypic plasticity in rice

(2017) Shinji Kikuchi et al.   PLANT CELL AND ENVIRONMENT

Salt Tolerance in Rice: Focus on Mechanisms and Approaches

(2017) Inja Naga Bheema Lingeswara Reddy et al.   Rice Science

Genetic architecture of cold tolerance in rice (Oryza sativa) determined through high resolution genome-wide analysis

(2017) Ehsan Shakiba et al.   PLoS One

Evaluating physiological responses of plants to salinity stress

(2016) S. Negrão et al.   ANNALS OF BOTANY

chromPlot: visualization of genomic data in chromosomal context

(2016) Karen Y. Oróstica et al.   BIOINFORMATICS

Ectopic expression of a cytochrome P450 monooxygenase genePtCYP714A3fromPopulus trichocarpareduces shoot growth and improves tolerance to salt stress in transgenic rice

(2016) Cuiting Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

Salt-responsive mechanisms in chromosome segment substitution lines of rice (Oryza sativa L. cv. KDML105)

(2016) Noppawan Nounjan et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Improvement of Salinity Stress Tolerance in Rice: Challenges and Opportunities

(2016) Thi Hoang et al.   Agronomy-Basel

From association to prediction: statistical methods for the dissection and selection of complex traits in plants

(2015) Alexander E Lipka et al.   CURRENT OPINION IN PLANT BIOLOGY

Genome-wide association mapping of salinity tolerance in rice (Oryza sativa)

(2015) V. Kumar et al.   DNA RESEARCH

SCF E3 ligase PP2-B11 plays a positive role in response to salt stress inArabidopsis

(2015) Fengjuan Jia et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genetic Architecture of Natural Variation in Rice Chlorophyll Content Revealed by a Genome-Wide Association Study

(2015) Quanxiu Wang et al.   Molecular Plant

Identification of salt tolerance-improving quantitative trait loci alleles from a salt-susceptible rice breeding line by introgression breeding

(2015) Xianjin Qiu et al.   PLANT BREEDING

A cytochrome P450, OsDSS1, is involved in growth and drought stress responses in rice (Oryza sativa L.)

(2015) Muluneh Tamiru et al.   PLANT MOLECULAR BIOLOGY

New quantitative trait loci for enhancing adaptation to salinity in rice from Hasawi, a Saudi landrace into three African cultivars at the reproductive stage

(2014) Isaac Kofi Bimpong et al.   EUPHYTICA

Mapping of Quantitative Trait Loci Associated with Reproductive-Stage Salt Tolerance in Rice

(2014) H. Hossain et al.   JOURNAL OF AGRONOMY AND CROP SCIENCE

Life and death under salt stress: same players, different timing?

(2014) Ahmed Ismail et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genetic dissection of ozone tolerance in rice (Oryza sativa L.) by a genome-wide association study

(2014) Yoshiaki Ueda et al.   JOURNAL OF EXPERIMENTAL BOTANY

OsMsr9, a novel putative rice F-box containing protein, confers enhanced salt tolerance in transgenic rice and Arabidopsis

(2014) Guoyun Xu et al.   MOLECULAR BREEDING

Efficient multivariate linear mixed model algorithms for genome-wide association studies

(2014) Xiang Zhou et al.   NATURE METHODS

The role of the F-box gene TaFBA1 from wheat ( Triticum aestivum L.) in drought tolerance

(2014) Shumei Zhou et al.   PLANT PHYSIOLOGY AND BIOCHEMISTRY

Plant salt-tolerance mechanisms

(2014) Ulrich Deinlein et al.   TRENDS IN PLANT SCIENCE

Application of resequencing to rice genomics, functional genomics and evolutionary analysis

(2014) Longbiao Guo et al.   Rice

Genotype × Environment Interactions for Agronomic Traits of Rice Revealed by Association Mapping

(2014) Fei-fei XU et al.   Rice Science

Natural Variations and Genome-Wide Association Studies in Crop Plants

(2013) Xuehui Huang et al.   Annual Review of Plant Biology

CYP709B3, a cytochrome P450 monooxygenase gene involved in salt tolerance in Arabidopsis thaliana

(2013) Guohong Mao et al.   BMC PLANT BIOLOGY

Mapping quantitative trait loci associated with yield and yield components under reproductive stage salinity stress in rice (Oryza sativa L.)

(2013) REZA MOHAMMADI et al.   JOURNAL OF GENETICS

Morpho-physiological variations in response to NaCl stress during vegetative and reproductive development of rice

(2012) Shantanu Devidas Wankhade et al.   ACTA PHYSIOLOGIAE PLANTARUM

Genome-wide efficient mixed-model analysis for association studies

(2012) Xiang Zhou et al.   NATURE GENETICS

Identification of QTLs with main, epistatic and QTL × environment interaction effects for salt tolerance in rice seedlings under different salinity conditions

(2012) Zhoufei Wang et al.   THEORETICAL AND APPLIED GENETICS

Rice functional genomics research: Progress and implications for crop genetic improvement

(2011) Yunhe Jiang et al.   BIOTECHNOLOGY ADVANCES

Statistical Mutation Calling from Sequenced Overlapping DNA Pools in TILLING Experiments

(2011) Victor Missirian et al.   BMC BIOINFORMATICS

Abiotic stress tolerance mediated by protein ubiquitination

(2011) W. J. Lyzenga et al.   JOURNAL OF EXPERIMENTAL BOTANY

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm

(2011) Xuehui Huang et al.   NATURE GENETICS

Population genetics of genomics-based crop improvement methods

(2011) Martha T. Hamblin et al.   TRENDS IN GENETICS

Genetic Architecture of Aluminum Tolerance in Rice (Oryza sativa) Determined through Genome-Wide Association Analysis and QTL Mapping

(2011) Adam N. Famoso et al.   PLoS Genetics

Genome-wide association studies in plants: the missing heritability is in the field

(2011) Benjamin Brachi et al.   GENOME BIOLOGY

Quantitative trait loci controlling rice seed germination under salt stress

(2010) Zhoufei Wang et al.   EUPHYTICA

Dynamic quantitative trait loci for salt stress components on chromosome 1 of rice

(2010) Tanveer Ul Haq et al.   FUNCTIONAL PLANT BIOLOGY

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Overexpression of an F-box Protein Gene Reduces Abiotic Stress Tolerance and Promotes Root Growth in Rice

(2010) Yong-Sheng Yan et al.   Molecular Plant

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

(2010) Susanna Atwell et al.   NATURE

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Association Mapping: Critical Considerations Shift from Genotyping to Experimental Design

(2009) S. Myles et al.   PLANT CELL

QTL Mapping in New Arabidopsis thaliana Advanced Intercross-Recombinant Inbred Lines

(2009) Sureshkumar Balasubramanian et al.   PLoS One

Evolution of F-box genes in plants: Different modes of sequence divergence and their relationships with functional diversification

(2009) Guixia Xu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Photosynthesis under drought and salt stress: regulation mechanisms from whole plant to cell

(2008) M. M. Chaves et al.   ANNALS OF BOTANY

Mechanisms of Salinity Tolerance

(2008) Rana Munns et al.   Annual Review of Plant Biology

Genetic approaches to crop improvement: responding to environmental and population changes

(2008) Shin Takeda et al.   NATURE REVIEWS GENETICS