IMOS: improved Meta-aligner and Minimap2 On Spark

SimLoRD: Simulation of Long Read Data

(2016) Bianca K. Stöcker et al.   BIOINFORMATICS

SparkBWA: Speeding Up the Alignment of High-Throughput DNA Sequencing Data

(2016) José M. Abuín et al.   PLoS One

DistMap: A Toolkit for Distributed Short Read Mapping on a Hadoop Cluster

(2013) Ram Vinay Pandey et al.   PLoS One

PBSIM: PacBio reads simulator—toward accurate genome assembly

(2012) Yukiteru Ono et al.   BIOINFORMATICS

Mapping single molecule sequencing reads using basic local alignment with successive refinement (BLASR): application and theory

(2012) Mark J Chaisson et al.   BMC BIOINFORMATICS

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

(2009) Ben Langmead et al.   GENOME BIOLOGY