Differential network enrichment analysis reveals novel lipid pathways in chronic kidney disease

Palmitate induces mitochondrial superoxide generation and activates AMPK in podocytes

(2017) Eugene Lee et al.   JOURNAL OF CELLULAR PHYSIOLOGY

Impaired β -Oxidation and Altered Complex Lipid Fatty Acid Partitioning with Advancing CKD

(2017) Farsad Afshinnia et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

Insulin resistance in chronic kidney disease

(2017) Hong Xu et al.   NEPHROLOGY

Autophagy Protects against Palmitic Acid-Induced Apoptosis in Podocytes in vitro

(2017) Xu-shun Jiang et al.   Scientific Reports

Network-based pathway enrichment analysis with incomplete network information

(2016) Jing Ma et al.   BIOINFORMATICS

MICOS and phospholipid transfer by Ups2–Mdm35 organize membrane lipid synthesis in mitochondria

(2016) Mari J. Aaltonen et al.   JOURNAL OF CELL BIOLOGY

Insulin Resistance as a Therapeutic Target for Chronic Kidney Disease

(2015) Daniel Teta   JOURNAL OF RENAL NUTRITION

Pathway and network analysis of cancer genomes

(2015)   NATURE METHODS

Efficient exploration of pan-cancer networks by generalized covariance selection and interactive web content

(2015) Teresia Kling et al.   NUCLEIC ACIDS RESEARCH

Confidence intervals for high-dimensional inverse covariance estimation

(2015) Jana Janková et al.   Electronic Journal of Statistics

Palmitate induces ER calcium depletion and apoptosis in mouse podocytes subsequent to mitochondrial oxidative stress

(2015) S Xu et al.   Cell Death & Disease

MICOS coordinates with respiratory complexes and lipids to establish mitochondrial inner membrane architecture

(2015) Jonathan R Friedman et al.   eLife

Renal Lipotoxicity-Associated Inflammation and Insulin Resistance Affects Actin Cytoskeleton Organization in Podocytes

(2015) Cristina Martínez-García et al.   PLoS One

Fatty acids are novel nutrient factors to regulate mTORC1 lysosomal localization and apoptosis in podocytes

(2014) Mako Yasuda et al.   BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE

Discovery of a bifunctional cardiolipin/phosphatidylethanolamine synthase in bacteria

(2014) Roman Moser et al.   MOLECULAR MICROBIOLOGY

Susceptibility of Podocytes to Palmitic Acid Is Regulated by Stearoyl-CoA Desaturases 1 and 2

(2013) Jonas Sieber et al.   AMERICAN JOURNAL OF PATHOLOGY

Cardiolipin-dependent formation of mitochondrial respiratory supercomplexes

(2013) Eugenia Mileykovskaya et al.   CHEMISTRY AND PHYSICS OF LIPIDS

Lipids of mitochondria

(2013) Susanne E. Horvath et al.   PROGRESS IN LIPID RESEARCH

MetaMapp: mapping and visualizing metabolomic data by integrating information from biochemical pathways and chemical and mass spectral similarity

(2012) Dinesh K Barupal et al.   BMC BIOINFORMATICS

Cardiolipin and Mitochondrial Phosphatidylethanolamine Have Overlapping Functions in Mitochondrial Fusion inSaccharomyces cerevisiae

(2012) Amit S. Joshi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Phosphatidylethanolamine Deficiency in Mammalian Mitochondria Impairs Oxidative Phosphorylation and Alters Mitochondrial Morphology

(2012) Guergana Tasseva et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Cardiolipin-dependent Reconstitution of Respiratory Supercomplexes from PurifiedSaccharomyces cerevisiaeComplexes III and IV

(2012) Soledad Bazán et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Phosphatidylethanolamine and Cardiolipin Differentially Affect the Stability of Mitochondrial Respiratory Chain Supercomplexes

(2012) Lena Böttinger et al.   JOURNAL OF MOLECULAR BIOLOGY

Variable selection with error control: another look at stability selection

(2012) Rajen D. Shah et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Differential network biology

(2012) Trey Ideker et al.   Molecular Systems Biology

Consensus clustering in complex networks

(2012) Andrea Lancichinetti et al.   Scientific Reports

Joint estimation of multiple graphical models

(2011) J. Guo et al.   BIOMETRIKA

Oleate and eicosapentaenoic acid attenuate palmitate-induced inflammation and apoptosis in renal proximal tubular cell

(2010) Mariko Soumura et al.   BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS

Metabolite Profiling Identifies Markers of Uremia

(2010) E. P. Rhee et al.   JOURNAL OF THE AMERICAN SOCIETY OF NEPHROLOGY

Stability selection

(2010) Nicolai Meinshausen et al.   JOURNAL OF THE ROYAL STATISTICAL SOCIETY SERIES B-STATISTICAL METHODOLOGY

Network Enrichment Analysis in Complex Experiments

(2010) Ali Shojaie et al.   Statistical Applications in Genetics and Molecular Biology

Compensation for Systematic Cross-Contribution Improves Normalization of Mass Spectrometry Based Metabolomics Data

(2009) Henning Redestig et al.   ANALYTICAL CHEMISTRY

Analysis of Gene Sets Based on the Underlying Regulatory Network

(2009) Ali Shojaie et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Saturated fatty acids induce insulin resistance in human podocytes: implications for diabetic nephropathy

(2009) R. Lennon et al.   NEPHROLOGY DIALYSIS TRANSPLANTATION

Physiological consequences of disruption of mammalian phospholipid biosynthetic genes

(2008) Dennis E. Vance et al.   JOURNAL OF LIPID RESEARCH

Fast unfolding of communities in large networks

(2008) Vincent D Blondel et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

Survival of the sparsest: robust gene networks are parsimonious

(2008) Robert D Leclerc   Molecular Systems Biology

Maps of random walks on complex networks reveal community structure

(2008) M. Rosvall et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Prevalence of 4977bp Deletion in Mitochondrial DNA from Patients with Chronic Kidney Disease Receiving Conservative Treatment or Hemodialysis in Southern Brazil

(2008) Liana Bertolin Rossato et al.   RENAL FAILURE