Two-Tier Mapper, an unbiased topology-based clustering method for enhanced global gene expression analysis

Single-cell topological RNA-seq analysis reveals insights into cellular differentiation and development

(2017) Abbas H Rizvi et al.   NATURE BIOTECHNOLOGY

Quantifying similarity of pore-geometry in nanoporous materials

(2017) Yongjin Lee et al.   Nature Communications

PANTHER version 11: expanded annotation data from Gene Ontology and Reactome pathways, and data analysis tool enhancements

(2016) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

Topological data analysis for discovery in preclinical spinal cord injury and traumatic brain injury

(2015) Jessica L. Nielson et al.   Nature Communications

Head and neck cancer subtypes with biological and clinical relevance: Meta-analysis of gene-expression data

(2015) Loris De Cecco et al.   Oncotarget

An interferon signature identified by RNA-sequencing of mammary tissues varies across the estrous cycle and is predictive of metastasis-free survival

(2015) Antoine M. Snijders et al.   Oncotarget

RANKL expression in normal and malignant breast tissue responds to progesterone and is up-regulated during the luteal phase

(2014) Hong Hu et al.   BREAST CANCER RESEARCH AND TREATMENT

Topology of viral evolution

(2013) J. M. Chan et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Extracting insights from the shape of complex data using topology

(2013) P. Y. Lum et al.   Scientific Reports

A comprehensive evaluation of normalization methods for Illumina high-throughput RNA sequencing data analysis

(2012) M.-A. Dillies et al.   BRIEFINGS IN BIOINFORMATICS

Topology based data analysis identifies a subgroup of breast cancers with a unique mutational profile and excellent survival

(2011) M. Nicolau et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Topology and data

(2009) Gunnar Carlsson   BULLETIN OF THE AMERICAN MATHEMATICAL SOCIETY