Characterizing the Key Agents in a Disease-Suppressed Soil Managed by Reductive Soil Disinfestation

Soil pH mediates the balance between stochastic and deterministic assembly of bacteria

(2018) Binu M. Tripathi et al.   ISME Journal

Spatial scale affects the relative role of stochasticity versus determinism in soil bacterial communities in wheat fields across the North China Plain

(2018) Yu Shi et al.   Microbiome

Effect of anaerobic soil disinfestation on the bacterial community and key soilborne phytopathogenic agents under walnut tree-crop nursery conditions

(2017) S.L. Strauss et al.   PLANT AND SOIL

Changes in the soil microbial community after reductive soil disinfestation and cucumber seedling cultivation

(2016) Xinqi Huang et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

The occurrence of pathogen suppressive soils in Sweden in relation to soil biota, soil properties, and farming practices

(2016) Michael T. Löbmann et al.   APPLIED SOIL ECOLOGY

The microbial changes during the biological control of cucumber damping-off disease using biocontrol agents and reductive soil disinfestation

(2016) Xinqi Huang et al.   BIOCONTROL

Reductive soil disinfestations combined or not with Trichoderma for the treatment of a degraded and Rhizoctonia solani infested greenhouse soil

(2016) Xinqi Huang et al.   SCIENTIA HORTICULTURAE

Microbial and biochemical basis of a Fusarium wilt-suppressive soil

(2015) Jae-Yul Cha et al.   ISME Journal

Illumina MiSeq investigations on the changes of microbial community in the Fusarium oxysporum f.sp. cubense infected soil during and after reductive soil disinfestation

(2015) Xinqi Huang et al.   MICROBIOLOGICAL RESEARCH

Legacy effects of anaerobic soil disinfestation on soil bacterial community composition and production of pathogen-suppressing volatiles

(2015) Maaike van Agtmaal et al.   Frontiers in Microbiology

Carbon source-dependent antifungal and nematicidal volatiles derived during anaerobic soil disinfestation

(2014) Shashika Shivanthi Hewavitharana et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Anaerobic Soil Disinfestation (ASD) Combined with Soil Solarization as a Methyl Bromide Alternative: Vegetable Crop Performance and Soil Nutrient Dynamics

(2014) David M. Butler et al.   PLANT AND SOIL

Responses of Bacterial Communities in Arable Soils in a Rice-Wheat Cropping System to Different Fertilizer Regimes and Sampling Times

(2014) Jun Zhao et al.   PLoS One

Development of biological soil disinfestations in Japan

(2013) Noriaki Momma et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

Stochastic and deterministic assembly processes in subsurface microbial communities

(2012) James C Stegen et al.   ISME Journal

Soil Suppressiveness to Fusarium Disease: Shifts in Root Microbiome Associated with Reduction of Pathogen Root Colonization

(2012) Eyal Klein et al.   PHYTOPATHOLOGY

High-Coverage ITS Primers for the DNA-Based Identification of Ascomycetes and Basidiomycetes in Environmental Samples

(2012) Hirokazu Toju et al.   PLoS One

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Effects of soil pH on rhizoctonia damping-off of sugar beet and disease suppression induced by soil amendment with crop residues

(2011) Kaori Watanabe et al.   PLANT AND SOIL

Deciphering the Rhizosphere Microbiome for Disease-Suppressive Bacteria

(2011) R. Mendes et al.   SCIENCE

Picante: R tools for integrating phylogenies and ecology

(2010) S. W. Kembel et al.   BIOINFORMATICS

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Comparison of rhizobacterial community composition in soil suppressive or conducive to tobacco black root rot disease

(2009) Martina Kyselková et al.   ISME Journal

Identifying the characteristics of organic soil amendments that suppress soilborne plant diseases

(2009) Giuliano Bonanomi et al.   SOIL BIOLOGY & BIOCHEMISTRY