Population structure and genetic diversity of four Henan pig populations

Analysis of genetic relatedness among Indian cattle (Bos indicus ) using genotyping-by-sequencing markers

(2018) A. A. Malik et al.   ANIMAL GENETICS

Genotyping-by-sequencing performance in selected livestock species

(2018) Artur Gurgul et al.   GENOMICS

Genomic analysis reveals selection in Chinese native black pig

(2016) Yuhua Fu et al.   Scientific Reports

A genome-wide scan for signatures of selection in Chinese indigenous and commercial pig breeds

(2014) Songbai Yang et al.   BMC GENETICS

Genetic Diversity, Linkage Disequilibrium and Selection Signatures in Chinese and Western Pigs Revealed by Genome-Wide SNP Markers

(2013) Huashui Ai et al.   PLoS One

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Fast and accurate long-read alignment with Burrows–Wheeler transform

(2010) Heng Li et al.   BIOINFORMATICS

ANNOVAR: functional annotation of genetic variants from high-throughput sequencing data

(2010) K. Wang et al.   NUCLEIC ACIDS RESEARCH

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Linkage disequilibrium — understanding the evolutionary past and mapping the medical future

(2008) Montgomery Slatkin   NATURE REVIEWS GENETICS