Reconciling multiple genes trees via segmental duplications and losses

Accurate prediction of orthologs in the presence of divergence after duplication

(2018) Manuel Lafond et al.   BIOINFORMATICS

Gene transfers can date the tree of life

(2018) Adrián A. Davín et al.   Nature Ecology & Evolution

DeCoSTAR: Reconstructing the Ancestral Organization of Genes or Genomes Using Reconciled Phylogenies

(2017) Wandrille Duchemin et al.   Genome Biology and Evolution

The link between orthology relations and gene trees: a correction perspective

(2016) Manuel Lafond et al.   Algorithms for Molecular Biology

ecceTERA: comprehensive gene tree-species tree reconciliation using parsimony: Table 1.

(2016) Edwin Jacox et al.   BIOINFORMATICS

A fast method for calculating reliable event supports in tree reconciliations via Pareto optimality

(2015) Thu-Hien To et al.   BMC BIOINFORMATICS

Integrating Sequence Evolution into Probabilistic Orthology Analysis

(2015) Ikram Ullah et al.   SYSTEMATIC BIOLOGY

Reconciliation and local gene tree rearrangement can be of mutual profit

(2013) Thi Nguyen et al.   Algorithms for Molecular Biology

Rapid evolutionary innovation during an Archaean genetic expansion

(2010) Lawrence A. David et al.   NATURE

Linear-Time Algorithms for the Multiple Gene Duplication Problems

(2009) Cheng-Wei Luo et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Evolution of pathogenicity and sexual reproduction in eight Candida genomes

(2009) Geraldine Butler et al.   NATURE

The multiple gene duplication problem revisited

(2008) M. S. Bansal et al.   BIOINFORMATICS