External memory BWT and LCP computation for sequence collections with applications

MUMmer4: A fast and versatile genome alignment system

(2018) Guillaume Marçais et al.   PLoS Computational Biology

Inducing enhanced suffix arrays for string collections

(2017) Felipe A. Louza et al.   THEORETICAL COMPUTER SCIENCE

An External-Memory Algorithm for String Graph Construction

(2016) Paola Bonizzoni et al.   ALGORITHMICA

Merging of multi-string BWTs with applications

(2014) J. Holt et al.   BIOINFORMATICS

Practical linear-timeO(1)-workspace suffix sorting for constant alphabets

(2013) Ge Nong   ACM TRANSACTIONS ON INFORMATION SYSTEMS

Lightweight algorithms for constructing and inverting the BWT of string collections

(2012) Markus J. Bauer et al.   THEORETICAL COMPUTER SCIENCE

Efficient Maximal Repeat Finding Using the Burrows-Wheeler Transform and Wavelet Tree

(2011) M. Oguzhan Kulekci et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Efficient algorithms for the all-pairs suffix-prefix problem and the all-pairs substring-prefix problem

(2009) Enno Ohlebusch et al.   INFORMATION PROCESSING LETTERS

STXXL: standard template library for XXL data sets

(2007) R. Dementiev et al.   SOFTWARE-PRACTICE & EXPERIENCE