HapCol: accurate and memory-efficient haplotype assembly from long reads

WhatsHap: Weighted Haplotype Assembly for Future-Generation Sequencing Reads

(2015) Murray Patterson et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Improved data analysis for the MinION nanopore sequencer

(2015) Miten Jain et al.   NATURE METHODS

Probabilistic single-individual haplotyping

(2014) V. Kuleshov   BIOINFORMATICS

Exact algorithms for haplotype assembly from whole-genome sequence data

(2013) Zhi-Zhong Chen et al.   BIOINFORMATICS

Hap-seq: An Optimal Algorithm for Haplotype Phasing with Imputation Using Sequencing Data

(2013) Dan He et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Pacific biosciences sequencing technology for genotyping and variation discovery in human data

(2012) Mauricio O Carneiro et al.   BMC GENOMICS

HapCompass: A Fast Cycle Basis Algorithm for Accurate Haplotype Assembly of Sequence Data

(2012) Derek Aguiar et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Validation of ITD mutations in FLT3 as a therapeutic target in human acute myeloid leukaemia

(2012) Catherine C. Smith et al.   NATURE

An Efficient Algorithm for Haplotype Inference on Pedigrees with Recombinations and Mutations

(2011) Y. Pirola et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A framework for variation discovery and genotyping using next-generation DNA sequencing data

(2011) Mark A DePristo et al.   NATURE GENETICS

Haplotype phasing: existing methods and new developments

(2011) Sharon R. Browning et al.   NATURE REVIEWS GENETICS

Genotype and SNP calling from next-generation sequencing data

(2011) Rasmus Nielsen et al.   NATURE REVIEWS GENETICS

Fosmid-based whole genome haplotyping of a HapMap trio child: evaluation of Single Individual Haplotyping techniques

(2011) Jorge Duitama et al.   NUCLEIC ACIDS RESEARCH

Optimal algorithms for haplotype assembly from whole-genome sequence data

(2010) D. He et al.   BIOINFORMATICS

HapCUT: an efficient and accurate algorithm for the haplotype assembly problem

(2008) V. Bansal et al.   BIOINFORMATICS