Exploring the structure and function of temporal networks with dynamic graphlets

MAGNA: Maximizing Accuracy in Global Network Alignment

(2014) Vikram Saraph et al.   BIOINFORMATICS

Dynamic networks reveal key players in aging

(2014) Fazle E. Faisal et al.   BIOINFORMATICS

GR-Align: fast and flexible alignment of protein 3D structures using graphlet degree similarity

(2014) Noël Malod-Dognin et al.   BIOINFORMATICS

Graft: An Efficient Graphlet Counting Method for Large Graph Analysis

(2014) Mahmudur Rahman et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

Finding Alignments of Conserved Graphlets in Protein Interaction Networks

(2014) Mu-Fen Hsieh et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Identification of Human Disease Genes from Interactome Network Using Graphlet Interaction

(2014) Xiao-Dong Wang et al.   PLoS One

Revealing Missing Parts of the Interactome via Link Prediction

(2014) Yuriy Hulovatyy et al.   PLoS One

Comparative network analysis via differential graphlet communities

(2014) Serene W. H. Wong et al.   PROTEOMICS

Revealing the Hidden Language of Complex Networks

(2014) Ömer Nebil Yaveroğlu et al.   Scientific Reports

Graphlet signature-based scoring method to estimate protein-ligand binding affinity

(2014) O. Singh et al.   Royal Society Open Science

A combinatorial approach to graphlet counting

(2013) Tomaž Hočevar et al.   BIOINFORMATICS

Temporal motifs reveal homophily, gender-specific patterns, and group talk in call sequences

(2013) L. Kovanen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Graphlet-based edge clustering reveals pathogen-interacting proteins

(2012) R. W. Solava et al.   BIOINFORMATICS

Components in time-varying graphs

(2012) Vincenzo Nicosia et al.   CHAOS

Temporal networks

(2012) Petter Holme et al.   PHYSICS REPORTS-REVIEW SECTION OF PHYSICS LETTERS

GraphCrunch 2: Software tool for network modeling, alignment and clustering

(2011) Oleksii Kuchaiev et al.   BMC BIOINFORMATICS

RAGE – A rapid graphlet enumerator for large networks

(2011) D. Marcus et al.   Computer Networks

Temporal motifs in time-dependent networks

(2011) Lauri Kovanen et al.   JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT

Dynamical Patterns of Cattle Trade Movements

(2011) Paolo Bajardi et al.   PLoS One

Dominating Biological Networks

(2011) Tijana Milenković et al.   PLoS One

Computational systems biology of aging

(2011) Andres Kriete et al.   Wiley Interdisciplinary Reviews-Systems Biology and Medicine

Protein-protein interactions: Making sense of networks via graph-theoretic modeling

(2010) Nataša Pržulj   BIOESSAYS

Protein interaction network topology uncovers melanogenesis regulatory network components within functional genomics datasets

(2010) Hsiang Ho et al.   BMC Systems Biology

Toward the dynamic interactome: it's about time

(2010) T. M. Przytycka et al.   BRIEFINGS IN BIOINFORMATICS

Graphlet Kernels for Prediction of Functional Residues in Protein Structures

(2010) Vladimir Vacic et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Topological network alignment uncovers biological function and phylogeny

(2010) O. Kuchaiev et al.   Journal of the Royal Society Interface

From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations

(2009) P. Du et al.   BIOINFORMATICS

Systems-level cancer gene identification from protein interaction network topology applied to melanogenesis-related functional genomics data

(2009) T. Milenkovic et al.   Journal of the Royal Society Interface

Optimized Null Model for Protein Structure Networks

(2009) Tijana Milenković et al.   PLoS One

The Human Ageing Genomic Resources: online databases and tools for biogerontologists

(2008) João Pedro de Magalhães et al.   AGING CELL

GraphCrunch: A tool for large network analyses

(2008) Tijana Milenković et al.   BMC BIOINFORMATICS

Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network

(2008) Gal Chechik et al.   NATURE BIOTECHNOLOGY

Dynamic small-world behavior in functional brain networks unveiled by an event-related networks approach

(2008) M. Valencia et al.   PHYSICAL REVIEW E

Gene expression changes in the course of normal brain aging are sexually dimorphic

(2008) N. C. Berchtold et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA