Oasis: online analysis of small RNA deep sequencing data

MAGI: a Node.js web service for fast microRNA-Seq analysis in a GPU infrastructure

(2014) Jihoon Kim et al.   BIOINFORMATICS

CAP-miRSeq: a comprehensive analysis pipeline for microRNA sequencing data

(2014) Zhifu Sun et al.   BMC GENOMICS

Circulating MicroRNA Biomarker Studies: Pitfalls and Potential Solutions

(2014) K. W. Witwer   CLINICAL CHEMISTRY

ISRNA: an integrative online toolkit for short reads from high-throughput sequencing data

(2013) Guan-Zheng Luo et al.   BIOINFORMATICS

GeneMANIA Prediction Server 2013 Update

(2013) Khalid Zuberi et al.   NUCLEIC ACIDS RESEARCH

STITCH 4: integration of protein–chemical interactions with user data

(2013) Michael Kuhn et al.   NUCLEIC ACIDS RESEARCH

mirTools 2.0 for non-coding RNA discovery, profiling, and functional annotation based on high-throughput sequencing

(2013) Jinyu Wu et al.   RNA Biology

CPSS: a computational platform for the analysis of small RNA deep sequencing data

(2012) Yuanwei Zhang et al.   BIOINFORMATICS

STRING v9.1: protein-protein interaction networks, with increased coverage and integration

(2012) Andrea Franceschini et al.   NUCLEIC ACIDS RESEARCH

g:Profiler—a web server for functional interpretation of gene lists (2011 update)

(2011) Jüri Reimand et al.   NUCLEIC ACIDS RESEARCH