FogLight: an efficient matrix-based approach to construct metabolic pathways by search space reduction

Metabolic engineering of Escherichia coli to enhance hydrogen production from glycerol

(2014) Kien Trung Tran et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Optimal metabolic route search based on atom mappings

(2014) Mario Latendresse et al.   BIOINFORMATICS

An efficient graph theory based method to identify every minimal reaction set in a metabolic network

(2014) Sudhakar Jonnalagadda et al.   BMC Systems Biology

Generation of an atlas for commodity chemical production in Escherichia coli and a novel pathway prediction algorithm, GEM-Path

(2014) Miguel A. Campodonico et al.   METABOLIC ENGINEERING

Metabolic engineering of Escherichia coli for high-specificity production of isoprenol and prenol as next generation of biofuels

(2013) Yanning Zheng et al.   Biotechnology for Biofuels

An evolutionary approach for searching metabolic pathways

(2013) Matias F. Gerard et al.   COMPUTERS IN BIOLOGY AND MEDICINE

The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of Pathway/Genome Databases

(2013) Ron Caspi et al.   NUCLEIC ACIDS RESEARCH

Data, information, knowledge and principle: back to metabolism in KEGG

(2013) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Enumerating metabolic pathways for the production of heterologous target chemicals in chassis organisms

(2012) Pablo Carbonell et al.   BMC Systems Biology

Cyanobacterial biofuel production

(2012) Iara M.P. Machado et al.   JOURNAL OF BIOTECHNOLOGY

Stoichiometric and energetic analyses of non-photosynthetic CO2-fixation pathways to support synthetic biology strategies for production of fuels and chemicals

(2012) Alan G Fast et al.   Current Opinion in Chemical Engineering

Probabilistic pathway construction

(2011) Mona Yousofshahi et al.   METABOLIC ENGINEERING

Path finding methods accounting for stoichiometry in metabolic networks

(2011) Jon Pey et al.   GENOME BIOLOGY

Machine learning methods for metabolic pathway prediction

(2010) Joseph M Dale et al.   BMC BIOINFORMATICS

Prediction of novel synthetic pathways for the production of desired chemicals

(2010) Ayoun Cho et al.   BMC Systems Biology

FMM: a web server for metabolic pathway reconstruction and comparative analysis

(2009) Chih-Hung Chou et al.   NUCLEIC ACIDS RESEARCH

DESHARKY: automatic design of metabolic pathways for optimal cell growth

(2008) Guillermo Rodrigo et al.   BIOINFORMATICS