Stratifying tumour subtypes based on copy number alteration profiles using next-generation sequence data

Estimating optimal window size for analysis of low-coverage next-generation sequence data

(2014) Arief Gusnanto et al.   BIOINFORMATICS

Correcting for cancer genome size and tumour cell content enables better estimation of copy number alterations from next-generation sequence data

(2011) Arief Gusnanto et al.   BIOINFORMATICS

GISTIC2.0 facilitates sensitive and confident localization of the targets of focal somatic copy-number alteration in human cancers

(2011) Craig H Mermel et al.   GENOME BIOLOGY

Should we continue to use the term non-small-cell lung cancer?

(2010) A. F. Gazdar   ANNALS OF ONCOLOGY

Using next-generation sequencing for high resolution multiplex analysis of copy number variation from nanogram quantities of DNA from formalin-fixed paraffin-embedded specimens

(2010) Henry M. Wood et al.   NUCLEIC ACIDS RESEARCH

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Classification of array CGH data using smoothed logistic regression model

(2009) Jian Huang et al.   STATISTICS IN MEDICINE