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Title
Halvade: scalable sequence analysis with MapReduce
Authors
Keywords
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Journal
BIOINFORMATICS
Volume 31, Issue 15, Pages 2482-2488
Publisher
Oxford University Press (OUP)
Online
2015-03-29
DOI
10.1093/bioinformatics/btv179
References
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Related references
Note: Only part of the references are listed.- Supercomputing for the parallelization of whole genome analysis
- (2014) M. J. Puckelwartz et al. BIOINFORMATICS
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- Hadoop-BAM: directly manipulating next generation sequencing data in the cloud
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- The impact of next-generation sequencing on genomics
- (2011) Jun Zhang et al. Journal of Genetics and Genomics
- A framework for variation discovery and genotyping using next-generation DNA sequencing data
- (2011) Mark A DePristo et al. NATURE GENETICS
- Genotype and SNP calling from next-generation sequencing data
- (2011) Rasmus Nielsen et al. NATURE REVIEWS GENETICS
- BEDTools: a flexible suite of utilities for comparing genomic features
- (2010) Aaron R. Quinlan et al. BIOINFORMATICS
- The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data
- (2010) A. McKenna et al. GENOME RESEARCH
- CloudBurst: highly sensitive read mapping with MapReduce
- (2009) M. C. Schatz BIOINFORMATICS
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Fast and accurate short read alignment with Burrows-Wheeler transform
- (2009) H. Li et al. BIOINFORMATICS
- Searching for SNPs with cloud computing
- (2009) Ben Langmead et al. GENOME BIOLOGY
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- SOAP: short oligonucleotide alignment program
- (2008) R. Li et al. BIOINFORMATICS
- MapReduce
- (2008) Jeffrey Dean et al. COMMUNICATIONS OF THE ACM
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