Multiscale reaction-diffusion simulations with Smoldyn: Fig. 1.

Adaptive two-regime method: Application to front propagation

(2014) Martin Robinson et al.   JOURNAL OF CHEMICAL PHYSICS

Analysis of the Two-Regime Method on Square Meshes

(2014) Mark B. Flegg et al.   SIAM JOURNAL ON SCIENTIFIC COMPUTING

Multiscale Stochastic Reaction–Diffusion Modeling: Application to Actin Dynamics in Filopodia

(2013) Radek Erban et al.   BULLETIN OF MATHEMATICAL BIOLOGY

Diffusive spatio-temporal noise in a first-passage time model for intracellular calcium release

(2013) Mark B. Flegg et al.   JOURNAL OF CHEMICAL PHYSICS

Hybrid spatial Gillespie and particle tracking simulation

(2012) Michael Klann et al.   BIOINFORMATICS

Coupled Mesoscopic and Microscopic Simulation of Stochastic Reaction-Diffusion Processes in Mixed Dimensions

(2012) Andreas Hellander et al.   MULTISCALE MODELING & SIMULATION

The two-regime method for optimizing stochastic reaction-diffusion simulations

(2011) M. B. Flegg et al.   Journal of the Royal Society Interface

Spatio-temporal correlations can drastically change the response of a MAPK pathway

(2010) K. Takahashi et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Detailed Simulations of Cell Biology with Smoldyn 2.1

(2010) Steven S. Andrews et al.   PLoS Computational Biology

Molecular noise of capping protein binding induces macroscopic instability in filopodial dynamics

(2009) Pavel I. Zhuravlev et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA