Robust reconstruction of gene expression profiles from reporter gene data using linear inversion

Inference of Quantitative Models of Bacterial Promoters from Time-Series Reporter Gene Data

(2015) Diana Stefan et al.   PLoS Computational Biology

Unmixing of fluorescence spectra to resolve quantitative time-series measurements of gene expression in plate readers

(2014) Catherine A Lichten et al.   BMC BIOTECHNOLOGY

Reverse engineering and identification in systems biology: strategies, perspectives and challenges

(2013) A. F. Villaverde et al.   Journal of the Royal Society Interface

Promoters maintain their relative activity levels under different growth conditions

(2013) L. Keren et al.   Molecular Systems Biology

Dissecting specific and global transcriptional regulation of bacterial gene expression

(2013) L. Gerosa et al.   Molecular Systems Biology

Shared control of gene expression in bacteria by transcription factors and global physiology of the cell

(2013) S. Berthoumieux et al.   Molecular Systems Biology

A genome-wide screen for identifying all regulators of a target gene

(2013) Guillaume Baptist et al.   NUCLEIC ACIDS RESEARCH

BasyLiCA: a tool for automatic processing of a Bacterial Live Cell Array

(2012) Leslie Aïchaoui et al.   BIOINFORMATICS

WellReader: a MATLAB program for the analysis of fluorescence and luminescence reporter gene data

(2010) Frédéric Boyer et al.   BIOINFORMATICS

Experimental and computational validation of models of fluorescent and luminescent reporter genes in bacteria

(2010) Hidde de Jong et al.   BMC Systems Biology

Advantages and limitations of current network inference methods

(2010) Riet De Smet et al.   NATURE REVIEWS MICROBIOLOGY

Fluorescent Proteins and Their Applications in Imaging Living Cells and Tissues

(2010) Dmitriy M. Chudakov et al.   PHYSIOLOGICAL REVIEWS

Reconstruction of transcriptional dynamics from gene reporter data using differential equations

(2008) Bärbel Finkenstädt et al.   BIOINFORMATICS

Mathematical Analysis and Quantification of Fluorescent Proteins as Transcriptional Reporters

(2007) Xiao Wang et al.   BIOPHYSICAL JOURNAL