Pairwise RNA secondary structure alignment with conserved stem pattern

Conformational Features of Topologically Classified RNA Secondary Structures

(2012) Jimmy Ka Ho Chiu et al.   PLoS One

A Long Noncoding RNA Controls Muscle Differentiation by Functioning as a Competing Endogenous RNA

(2011) Marcella Cesana et al.   CELL

Emerging structural themes in large RNA molecules

(2011) Nicholas J Reiter et al.   CURRENT OPINION IN STRUCTURAL BIOLOGY

Alignments of RNA Structures

(2010) Guillaume Blin et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Average complexity of the Jiang–Wang–Zhang pairwise tree alignment algorithm and of a RNA secondary structure alignment algorithm

(2010) Claire Herrbach et al.   THEORETICAL COMPUTER SCIENCE

VARNA: Interactive drawing and editing of the RNA secondary structure

(2009) Kévin Darty et al.   BIOINFORMATICS

NNDB: the nearest neighbor parameter database for predicting stability of nucleic acid secondary structure

(2009) Douglas H. Turner et al.   NUCLEIC ACIDS RESEARCH

RNA STRAND: The RNA Secondary Structure and Statistical Analysis Database

(2008) Mirela Andronescu et al.   BMC BIOINFORMATICS

Discovery of Structural and Functional Features in RNA Pseudoknots

(2008) Q. Chen et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

A multiple layer model to compare RNA secondary structures

(2007) Julien Allali et al.   SOFTWARE-PRACTICE & EXPERIENCE