BiC2PAM: constraint-guided biclustering for biological data analysis with domain knowledge

The paralog-to-contig assignment problem: high quality gene models from fragmented assemblies

(2016) Henrike Indrischek et al.   Algorithms for Molecular Biology

Integrating biological knowledge based on functional annotations for biclustering of gene expression data

(2015) Juan A. Nepomuceno et al.   COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE

Biclustering with Flexible Plaid Models to Unravel Interactions between Biological Processes

(2015) Rui Henriques et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A structured view on pattern mining-based biclustering

(2015) Rui Henriques et al.   PATTERN RECOGNITION

BicPAM: Pattern-based biclustering for biomedical data analysis

(2014) Rui Henriques et al.   Algorithms for Molecular Biology

BicSPAM: flexible biclustering using sequential patterns

(2014) Rui Henriques et al.   BMC BIOINFORMATICS

Generative modeling of repositories of health records for predictive tasks

(2014) Rui Henriques et al.   DATA MINING AND KNOWLEDGE DISCOVERY

STRING v10: protein–protein interaction networks, integrated over the tree of life

(2014) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Knowledge representation and processing with formal concept analysis

(2013) Sergei O. Kuznetsov et al.   Wiley Interdisciplinary Reviews-Data Mining and Knowledge Discovery

A Novel Biclustering Approach to Association Rule Mining for Predicting HIV-1–Human Protein Interactions

(2012) Anirban Mukhopadhyay et al.   PLoS One

High-Order SNP Combinations Associated with Complex Diseases: Efficient Discovery, Statistical Power and Functional Interactions

(2012) Gang Fang et al.   PLoS One

DeBi: Discovering Differentially Expressed Biclusters using a Frequent Itemset Approach

(2011) Akdes Serin et al.   Algorithms for Molecular Biology

Generalized association rule mining with constraints

(2011) Elena Baralis et al.   INFORMATION SCIENCES

A taxonomy of sequential pattern mining algorithms

(2010) Nizar R. Mabroukeh et al.   ACM COMPUTING SURVEYS

FABIA: factor analysis for bicluster acquisition

(2010) Sepp Hochreiter et al.   BIOINFORMATICS

Patterns of HIV-1 Protein Interaction Identify Perturbed Host-Cellular Subsystems

(2010) Jamie I. MacPherson et al.   PLoS Computational Biology

Gene association analysis: a survey of frequent pattern mining from gene expression data

(2009) R. Alves et al.   BRIEFINGS IN BIOINFORMATICS