BicNET: Flexible module discovery in large-scale biological networks using biclustering

Biclustering with Flexible Plaid Models to Unravel Interactions between Biological Processes

(2015) Rui Henriques et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A structured view on pattern mining-based biclustering

(2015) Rui Henriques et al.   PATTERN RECOGNITION

BicPAM: Pattern-based biclustering for biomedical data analysis

(2014) Rui Henriques et al.   Algorithms for Molecular Biology

BicSPAM: flexible biclustering using sequential patterns

(2014) Rui Henriques et al.   BMC BIOINFORMATICS

Incorporating the type and direction information in predicting novel regulatory interactions between HIV-1 and human proteins using a biclustering approach

(2014) Anirban Mukhopadhyay et al.   BMC BIOINFORMATICS

Discovering Study-Specific Gene Regulatory Networks

(2014) Valeria Bo et al.   PLoS One

Efficient mining of discriminative co-clusters from gene expression data

(2013) Omar Odibat et al.   KNOWLEDGE AND INFORMATION SYSTEMS

The YEASTRACT database: an upgraded information system for the analysis of gene and genomic transcription regulation inSaccharomyces cerevisiae

(2013) Miguel Cacho Teixeira et al.   NUCLEIC ACIDS RESEARCH

Mining Quasi-Bicliques from HIV-1-Human Protein Interaction Network: A Multiobjective Biclustering Approach

(2012) Ujjwal Maulik et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

A Novel Biclustering Approach to Association Rule Mining for Predicting HIV-1–Human Protein Interactions

(2012) Anirban Mukhopadhyay et al.   PLoS One

DeBi: Discovering Differentially Expressed Biclusters using a Frequent Itemset Approach

(2011) Akdes Serin et al.   Algorithms for Molecular Biology

Putting genetic interactions in context through a global modular decomposition

(2011) Jeremy Bellay et al.   GENOME RESEARCH

Saccharomyces Genome Database: the genomics resource of budding yeast

(2011) J. M. Cherry et al.   NUCLEIC ACIDS RESEARCH

Inferring cancer subnetwork markers using density-constrained biclustering

(2010) Phuong Dao et al.   BIOINFORMATICS

FABIA: factor analysis for bicluster acquisition

(2010) Sepp Hochreiter et al.   BIOINFORMATICS

Module Discovery by Exhaustive Search for Densely Connected, Co-Expressed Regions in Biomolecular Interaction Networks

(2010) Recep Colak et al.   PLoS One

Patterns of HIV-1 Protein Interaction Identify Perturbed Host-Cellular Subsystems

(2010) Jamie I. MacPherson et al.   PLoS Computational Biology

Enumeration of condition-dependent dense modules in protein interaction networks

(2009) Elisabeth Georgii et al.   BIOINFORMATICS

GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists

(2009) Eran Eden et al.   BMC BIOINFORMATICS

Identifying functional modules in protein-protein interaction networks: an integrated exact approach

(2008) M. T. Dittrich et al.   BIOINFORMATICS

Gene interaction – An evolutionary biclustering approach

(2008) Sushmita Mitra et al.   Information Fusion