Immune Gene Signature Delineates a Subclass of Papillary Thyroid Cancer with Unfavorable Clinical Outcomes

Immune landscape of papillary thyroid cancer and immunotherapeutic implications

(2018) Kwon Joong Na et al.   ENDOCRINE-RELATED CANCER

The Immune Landscape of Cancer

(2018) Vésteinn Thorsson et al.   IMMUNITY

Identification of an Immune-specific Class of Hepatocellular Carcinoma, Based on Molecular Features

(2017) Daniela Sia et al.   GASTROENTEROLOGY

Trends in Thyroid Cancer Incidence and Mortality in the United States, 1974-2013

(2017) Hyeyeun Lim et al.   JAMA-JOURNAL OF THE AMERICAN MEDICAL ASSOCIATION

Impact of Tumor Purity on Immune Gene Expression and Clustering Analyses across Multiple Cancer Types

(2017) Je-Keun Rhee et al.   Cancer Immunology Research

Leveraging the immune system to treat advanced thyroid cancers

(2017) Jena D French et al.   Lancet Diabetes & Endocrinology

TERTpromoter mutations in thyroid cancer

(2016) Rengyun Liu et al.   ENDOCRINE-RELATED CANCER

TERTpromoter mutations and long-term survival in patients with thyroid cancer

(2016) Tae Hyuk Kim et al.   ENDOCRINE-RELATED CANCER

2015 American Thyroid Association Management Guidelines for Adult Patients with Thyroid Nodules and Differentiated Thyroid Cancer: The American Thyroid Association Guidelines Task Force on Thyroid Nodules and Differentiated Thyroid Cancer

(2016) Bryan R. Haugen et al.   THYROID

Comprehensive Analysis of the Transcriptional and Mutational Landscape of Follicular and Papillary Thyroid Cancers

(2016) Seong-Keun Yoo et al.   PLoS Genetics

Molecular and Genetic Properties of Tumors Associated with Local Immune Cytolytic Activity

(2015) Michael S. Rooney et al.   CELL

Virtual microdissection identifies distinct tumor- and stroma-specific subtypes of pancreatic ductal adenocarcinoma

(2015) Richard A Moffitt et al.   NATURE GENETICS

MiXCR: software for comprehensive adaptive immunity profiling

(2015) Dmitriy A Bolotin et al.   NATURE METHODS

Robust enumeration of cell subsets from tissue expression profiles

(2015) Aaron M Newman et al.   NATURE METHODS

Pembrolizumab for the Treatment of Non–Small-Cell Lung Cancer

(2015) Edward B. Garon et al.   NEW ENGLAND JOURNAL OF MEDICINE

Pembrolizumab versus Ipilimumab in Advanced Melanoma

(2015) Caroline Robert et al.   NEW ENGLAND JOURNAL OF MEDICINE

Mutational landscape determines sensitivity to PD-1 blockade in non-small cell lung cancer

(2015) N. A. Rizvi et al.   SCIENCE

Antagonists of PD-1 and PD-L1 in Cancer Treatment

(2015) Evan J. Lipson et al.   SEMINARS IN ONCOLOGY

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Emerging roles of regulatory T cells in tumour progression and metastasis

(2014) Elizabeth C. Halvorsen et al.   CANCER AND METASTASIS REVIEWS

Integrated Genomic Characterization of Papillary Thyroid Carcinoma

(2014) Nishant Agrawal et al.   CELL

CD8+ tumour-infiltrating lymphocytes and COX2 expression may predict relapse in differentiated thyroid cancer

(2014) Lucas Leite Cunha et al.   CLINICAL ENDOCRINOLOGY

BRAF V600E and TERT Promoter Mutations Cooperatively Identify the Most Aggressive Papillary Thyroid Cancer With Highest Recurrence

(2014) Mingzhao Xing et al.   JOURNAL OF CLINICAL ONCOLOGY

Korea's Thyroid-Cancer “Epidemic” — Screening and Overdiagnosis

(2014) Hyeong Sik Ahn et al.   NEW ENGLAND JOURNAL OF MEDICINE

RNA Sequencing Identifies Multiple Fusion Transcripts, Differentially Expressed Genes, and Reduced Expression of Immune Function Genes inBRAF(V600E) Mutant vsBRAFWild-Type Papillary Thyroid Carcinoma

(2013) Robert C. Smallridge et al.   JOURNAL OF CLINICAL ENDOCRINOLOGY & METABOLISM

A study of recurrence and death from papillary thyroid cancer with 27 years of median follow-up

(2013) Raymon H. Grogan et al.   SURGERY

Inferring tumour purity and stromal and immune cell admixture from expression data

(2013) Kosuke Yoshihara et al.   Nature Communications

Density of Tumor-Associated Macrophages Correlates with Lymph Node Metastasis in Papillary Thyroid Carcinoma

(2012) Wei Qing et al.   THYROID

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

(2010) Cole Trapnell et al.   NATURE BIOTECHNOLOGY

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS