Black Queen Evolution and Trophic Interactions Determine Plasmid Survival after the Disruption of the Conjugation Network

Conjugative ESBL plasmids differ in their potential to rescue susceptible bacteria via horizontal gene transfer in lethal antibiotic concentrations

(2017) Sari Mattila et al.   JOURNAL OF ANTIBIOTICS

Gut Protozoa: Friends or Foes of the Human Gut Microbiota?

(2017) Magali Chabé et al.   TRENDS IN PARASITOLOGY

Persistence and reversal of plasmid-mediated antibiotic resistance

(2017) Allison J. Lopatkin et al.   Nature Communications

Selective Conditions for a Multidrug Resistance Plasmid Depend on the Sociality of Antibiotic Resistance

(2016) Michael J. Bottery et al.   ANTIMICROBIAL AGENTS AND CHEMOTHERAPY

Conjugation is necessary for a bacterial plasmid to survive under protozoan predation

(2016) Johannes Cairns et al.   Biology Letters

Scoping the effectiveness and evolutionary obstacles in using plasmid-dependent phages to fight antibiotic resistance

(2016) Ville Ojala et al.   Future Microbiology

Beyond the Black Queen Hypothesis

(2016) Alix Mas et al.   ISME Journal

Evolved plasmid-host interactions reduce plasmid interference cost

(2016) Hirokazu Yano et al.   MOLECULAR MICROBIOLOGY

Mobile genes in the human microbiome are structured from global to individual scales

(2016) I. L. Brito et al.   NATURE

Parallel Compensatory Evolution Stabilizes Plasmids across the Parasitism-Mutualism Continuum

(2015) Ellie Harrison et al.   CURRENT BIOLOGY

Live to cheat another day: bacterial dormancy facilitates the social exploitation of β-lactamases

(2015) Frances Medaney et al.   ISME Journal

Role of the Gut Microbiota of Children in Diarrhea Due to the Protozoan ParasiteEntamoeba histolytica

(2015) Carol A. Gilchrist et al.   JOURNAL OF INFECTIOUS DISEASES

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

Evolutionary Paths That Expand Plasmid Host-Range: Implications for Spread of Antibiotic Resistance

(2015) Wesley Loftie-Eaton et al.   MOLECULAR BIOLOGY AND EVOLUTION

Environmental fluctuations restrict eco-evolutionary dynamics in predator-prey system

(2015) T. Hiltunen et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Black Queen evolution: the role of leakiness in structuring microbial communities

(2015) J. Jeffrey Morris   TRENDS IN GENETICS

Beta Regression inR

(2015) Francisco Cribari-Neto et al.   Journal of Statistical Software

Selection of a Multidrug Resistance Plasmid by Sublethal Levels of Antibiotics and Heavy Metals

(2014) E. Gullberg et al.   mBio

Consumer co-evolution as an important component of the eco-evolutionary feedback

(2014) Teppo Hiltunen et al.   Nature Communications

Evolutionary rescue of bacteria via horizontal gene transfer under a lethal β-lactam concentration

(2014) Ville Ojala et al.   Journal of Global Antimicrobial Resistance

Fight evolution with evolution: plasmid-dependent phages with a wide host range prevent the spread of antibiotic resistance

(2013) Ville Ojala et al.   Evolutionary Applications

Antibiotic resistance—the need for global solutions

(2013) Ramanan Laxminarayan et al.   LANCET INFECTIOUS DISEASES

Bacterial cheating drives the population dynamics of cooperative antibiotic resistance plasmids

(2013) Eugene A Yurtsev et al.   Molecular Systems Biology

The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss

(2012) J. J. Morris et al.   mBio

Mobility of Plasmids

(2010) C. Smillie et al.   MICROBIOLOGY AND MOLECULAR BIOLOGY REVIEWS

Enumeration of protozoan ciliates in activated sludge: Determination of replicate number using probability

(2009) Donata Dubber et al.   WATER RESEARCH

Simultaneous Inference in General Parametric Models

(2008) Torsten Hothorn et al.   BIOMETRICAL JOURNAL