The genetic prehistory of the Andean highlands 7000 years BP though European contact

Genomic insights into the origin and diversification of late maritime hunter-gatherers from the Chilean Patagonia

(2018) Constanza de la Fuente et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolutionary genomic dynamics of Peruvians before, during, and after the Inca Empire

(2018) Daniel N. Harris et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Terminal Pleistocene Alaskan genome reveals first founding population of Native Americans

(2018) J. Víctor Moreno-Mayar et al.   NATURE

Early human dispersals within the Americas

(2018) J. Víctor Moreno-Mayar et al.   SCIENCE

Assessing the Relationship of Ancient and Modern Populations

(2017) Joshua G. Schraiber   GENETICS

Ancient individuals from the North American Northwest Coast reveal 10,000 years of regional genetic continuity

(2017) John Lindo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Interleukin-36 cytokines may overcome microbial immune evasion strategies that inhibit interleukin-1 family signaling

(2017) Liselotte E. Jensen   Science Signaling

Assessing the Relationship of Ancient and Modern Populations

(2017) Joshua G. Schraiber   GENETICS

Interleukin-36 cytokines may overcome microbial immune evasion strategies that inhibit interleukin-1 family signaling

(2017) Liselotte E. Jensen   Science Signaling

Estimating the total number of phosphoproteins and phosphorylation sites in eukaryotic proteomes

(2017) Panayotis Vlastaridis et al.   GigaScience

Evidence of Early-Stage Selection on EPAS1 and GPR126 Genes in Andean High Altitude Populations

(2017) Christina A. Eichstaedt et al.   Scientific Reports

Visualizing the geography of genetic variants

(2016) Joseph H. Marcus et al.   BIOINFORMATICS

pong: fast analysis and visualization of latent clusters in population genetic data

(2016) Aaron A. Behr et al.   BIOINFORMATICS

The Simons Genome Diversity Project: 300 genomes from 142 diverse populations

(2016) Swapan Mallick et al.   NATURE

Late Archaic–Early Formative period microbotanical evidence for potato at Jiskairumoko in the Titicaca Basin of southern Peru

(2016) Claudia Ursula Rumold et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ancient DNA reveals selection acting on genes associated with hypoxia response in pre-Columbian Peruvian Highlanders in the last 8500 years

(2016) Lars Fehren-Schmitz et al.   Scientific Reports

Natural Selection at the Brush-Border: Adaptations to Carbohydrate Diets in Humans and Other Mammals

(2015) Chiara Pontremoli et al.   Genome Biology and Evolution

A global reference for human genetic variation

(2015) Richard A. Gibbs et al.   NATURE

A Novel Candidate Region for Genetic Adaptation to High Altitude in Andean Populations

(2015) Guido Valverde et al.   PLoS One

Genomic evidence for the Pleistocene and recent population history of Native Americans

(2015) M. Raghavan et al.   SCIENCE

PathCards: multi-source consolidation of human biological pathways

(2015) Frida Belinky et al.   Database-The Journal of Biological Databases and Curation

ANGSD: Analysis of Next Generation Sequencing Data

(2014) Thorfinn Sand Korneliussen et al.   BMC BIOINFORMATICS

IL-36 Promotes Myeloid Cell Infiltration, Activation, and Inflammatory Activity in Skin

(2014) A. M. Foster et al.   JOURNAL OF IMMUNOLOGY

The genome of a Late Pleistocene human from a Clovis burial site in western Montana

(2014) Morten Rasmussen et al.   NATURE

Genome sequence of a 45,000-year-old modern human from western Siberia

(2014) Qiaomei Fu et al.   NATURE

Paleoindian settlement of the high-altitude Peruvian Andes

(2014) Kurt Rademaker et al.   SCIENCE

Admixture facilitates genetic adaptations to high altitude in Tibet

(2014) Choongwon Jeong et al.   Nature Communications

Population Genomic Analysis of Ancient and Modern Genomes Yields New Insights into the Genetic Ancestry of the Tyrolean Iceman and the Genetic Structure of Europe

(2014) Martin Sikora et al.   PLoS Genetics

mapDamage2.0: fast approximate Bayesian estimates of ancient DNA damage parameters

(2013) Hákon Jónsson et al.   BIOINFORMATICS

Genetic Signatures Reveal High-Altitude Adaptation in a Set of Ethiopian Populations

(2013) Emilia Huerta-Sánchez et al.   MOLECULAR BIOLOGY AND EVOLUTION

The complete genome sequence of a Neanderthal from the Altai Mountains

(2013) Kay Prüfer et al.   NATURE

Complete mitochondrial genome sequence of a Middle Pleistocene cave bear reconstructed from ultrashort DNA fragments

(2013) J. Dabney et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SHCal13 Southern Hemisphere Calibration, 0–50,000 Years cal BP

(2013) Alan G Hogg et al.   RADIOCARBON

Reconstructing Native American Migrations from Whole-Genome and Whole-Exome Data

(2013) Simon Gravel et al.   PLoS Genetics

Robust Demographic Inference from Genomic and SNP Data

(2013) Laurent Excoffier et al.   PLoS Genetics

NRE: a tool for exploring neutral loci in the human genome

(2012) Leonardo Arbiza et al.   BMC BIOINFORMATICS

Inference of Population Splits and Mixtures from Genome-Wide Allele Frequency Data

(2012) Joseph K. Pickrell et al.   PLoS Genetics

The variant call format and VCFtools

(2011) P. Danecek et al.   BIOINFORMATICS

Common SNPs/Haplotypes in IL18R1 and IL18 Genes Are Associated With Variations in Humoral Immunity to Smallpox Vaccination in Caucasians and African Americans

(2011) Iana H. Haralambieva et al.   JOURNAL OF INFECTIOUS DISEASES

HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants

(2011) L. D. Ward et al.   NUCLEIC ACIDS RESEARCH

The Genome Analysis Toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data

(2010) A. McKenna et al.   GENOME RESEARCH

Transcriptomic analysis of patients with tetralogy of Fallot reveals the effect of chronic hypoxia on myocardial gene expression

(2010) Mohamed T. Ghorbel et al.   JOURNAL OF THORACIC AND CARDIOVASCULAR SURGERY

Ancient human genome sequence of an extinct Palaeo-Eskimo

(2010) Morten Rasmussen et al.   NATURE

Hearts of Dystonia musculorum Mice Display Normal Morphological and Histological Features but Show Signs of Cardiac Stress

(2010) Justin G. Boyer et al.   PLoS One

Natural selection on EPAS1 (HIF2 ) associated with low hemoglobin concentration in Tibetan highlanders

(2010) C. M. Beall et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequencing of 50 Human Exomes Reveals Adaptation to High Altitude

(2010) X. Yi et al.   SCIENCE

GeneCards Version 3: the human gene integrator

(2010) M. Safran et al.   Database-The Journal of Biological Databases and Curation

Identifying Signatures of Natural Selection in Tibetan and Andean Populations Using Dense Genome Scan Data

(2010) Abigail Bigham et al.   PLoS Genetics

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

Fast model-based estimation of ancestry in unrelated individuals

(2009) D. H. Alexander et al.   GENOME RESEARCH

A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies

(2009) Bryan N. Howie et al.   PLoS Genetics

Monte Verde: Seaweed, Food, Medicine, and the Peopling of South America

(2008) T. D. Dillehay et al.   SCIENCE

Vaccinia virus proteins activate human dendritic cells to induce T cell responses in vitro

(2008) Sudhanshu Agrawal et al.   VACCINE