Including Phenotypic Causal Networks in Genome-Wide Association Studies Using Mixed Effects Structural Equation Models

Testing for the indirect effect under the null for genome-wide mediation analyses

(2017) Richard Barfield et al.   GENETIC EPIDEMIOLOGY

Genome-wide association test of multiple continuous traits using imputed SNPs

(2017) Baolin Wu et al.   Statistics and Its Interface

Genome-Wide Association Studies with a Genomic Relationship Matrix: A Case Study with Wheat and Arabidopsis

(2016) D. Gianola et al.   G3-Genes Genomes Genetics

Multiple-trait genome-wide association study based on principal component analysis for residual covariance matrix

(2014) H Gao et al.   HEREDITY

A New Method to Infer Causal Phenotype Networks Using QTL and Phenotypic Information

(2014) Huange Wang et al.   PLoS One

GWAS on your notebook: fast semi-parallel linear and logistic regression for genome-wide association studies

(2013) Karolina Sikorska et al.   BMC BIOINFORMATICS

Development of a high density 600K SNP genotyping array for chicken

(2013) Andreas Kranis et al.   BMC GENOMICS

The identification of 14 new genes for meat quality traits in chicken using a genome-wide association study

(2013) Yanfa Sun et al.   BMC GENOMICS

Is Structural Equation Modeling Advantageous for the Genetic Improvement of Multiple Traits?

(2013) B. D. Valente et al.   GENETICS

New aQTL SNPs for the CYP2D6 Identified by a Novel Mediation Analysis of Genome-Wide SNP Arrays, Gene Expression Arrays, and CYP2D6 Activity

(2013) Guanglong Jiang et al.   Biomed Research International

Genome-wide association mapping including phenotypes from relatives without genotypes

(2012) H. WANG et al.   Genetics Research

A mixed-model approach for genome-wide association studies of correlated traits in structured populations

(2012) Arthur Korte et al.   NATURE GENETICS

Genome-wide efficient mixed-model analysis for association studies

(2012) Xiang Zhou et al.   NATURE GENETICS

Improved linear mixed models for genome-wide association studies

(2012) Jennifer Listgarten et al.   NATURE METHODS

MultiPhen: Joint Model of Multiple Phenotypes Can Increase Discovery in GWAS

(2012) Paul F. O’Reilly et al.   PLoS One

“SNP Snappy”: A Strategy for Fast Genome-Wide Association Studies Fitting a Full Mixed Model

(2011) Karin Meyer et al.   GENETICS

Alternative parameterizations of the multiple-trait random regression model for milk yield and somatic cell score via recursive links between phenotypes

(2011) J. Jamrozik et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Genome-wide association studies in plants: the missing heritability is in the field

(2011) Benjamin Brachi et al.   GENOME BIOLOGY

Searching for Recursive Causal Structures in Multivariate Quantitative Genetics Mixed Models

(2010) B. D. Valente et al.   GENETICS

Bayesian mixture structural equation modelling in multiple-trait QTL mapping

(2010) XIAOJUAN MI et al.   Genetics Research

Genome-wide association and genomic selection in animal breedingThis article is one of a selection of papers from the conference “Exploiting Genome-wide Association in Oilseed Brassicas: a model for genetic improvement of major OECD crops for sustainable farming”.

(2010) Ben Hayes et al.   GENOME

Bayesian structural equation models for inferring relationships between phenotypes: a review of methodology, identifiability, and applications

(2010) Xiao-Lin Wu et al.   JOURNAL OF ANIMAL BREEDING AND GENETICS

Common SNPs explain a large proportion of the heritability for human height

(2010) Jian Yang et al.   NATURE GENETICS

Regression-Based Multi-Trait QTL Mapping Using a Structural Equation Model

(2010) Xiaojuan Mi et al.   Statistical Applications in Genetics and Molecular Biology

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE