4.8 Article

Importance of EMT Factor ZEB1 in cDC1 MutuDC Line Mediated Induction of Th1 Immune Response

Journal

FRONTIERS IN IMMUNOLOGY
Volume 9, Issue -, Pages -

Publisher

FRONTIERS MEDIA SA
DOI: 10.3389/fimmu.2018.02604

Keywords

ZEB1; cDC1 dendritic cells; integrative genomics; Th2 response; ChIP-seq; RNA-seq; helminth infection; immune modulation

Categories

Funding

  1. SERB [EMR/2016/000717]
  2. DST-SNSF [DST/INT/SWISS/SNSF/P-47/2015]
  3. DBT Ramalingaswami fellowship, DBT [BT/PR15908/MED/12/725/2016]

Ask authors/readers for more resources

The role of Epithelial to Mesenchymal Transition (EMT) factor Zeb1 is well defined in metastasis and cancer progression but it's importance in dendritic cells (DCs) is unexplored until now. For the first time we report here that Zeb1 controls immunogenic responses of CD8 alpha(+) conventional Type-I (cDC1) DCs. We found that ZEB1 expression increases significantly after TLR9 stimulation and its depletion impairs activation, co-stimulation and secretion of important cytokines like IL-6, IL-10 and IL-12 in cDC1 MutuDC line. We further confirmed our findings in primary cDC1 DCs derived from bone marrow. Co-culture of these Zeb1 knock down (KD) DCs with OT-II CD4(+) T helper cells skewed their differentiation toward Th2 subtype. Moreover, adoptive transfer of activated Zeb1 KD DCs cleared intestinal worms in helminth infected mice by increasing Th2 responses in vivo. Integrative genomic analysis showed Zeb1 as an activator of immune response genes in cDC1 MutuDCs as compared to other pathway genes. In addition, differentially regulated genes in Zeb1 KD RNA-seq showed significant enrichment of Th2 activation pathways supporting our in vitro findings. Mechanistically, we showed that decreased IL-12 secreted by Zeb1 KD DCs is the plausible mechanism for increased Th2 differentiation. Collectively our data demonstrate that Zeb1 could be targeted in DCs to modulate T-cell mediated adaptive immune responses.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.8
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Plant Sciences

EumicrobeDBLite: a lightweight genomic resource and analytic platform for draft oomycete genomes

Arijit Panda, Diya Sen, Arup Ghosh, Akash Gupta, Mathu C. Malar, Gyan Prakash Mishra, Deeksha Singh, Wenwu Ye, Brett M. Tyler, Sucheta Tripathy

MOLECULAR PLANT PATHOLOGY (2018)

Article Biochemistry & Molecular Biology

Leukotriene B4 modulation of murine dendritic cells affects adaptive immunity

Marco Antonio Pires-Lapa, Marianna Mainardi Koga, Ildefonso Alves da Silva, Luciano Ribeiro Filgueiras, Sonia Jancar

PROSTAGLANDINS & OTHER LIPID MEDIATORS (2019)

Article Genetics & Heredity

BedSect: An Integrated Web Server Application to Perform Intersection, Visualization, and Functional Annotation of Genomic Regions From Multiple Datasets

Gyan Prakash Mishra, Arup Ghosh, Atimukta Jha, Sunil Kumar Raghav

FRONTIERS IN GENETICS (2020)

Article Cell Biology

Altered mitochondrial proteome and functional dynamics in patients with rheumatoid arthritis

Shweta Khanna, Prasanta Padhan, Kumar S. Jaiswal, Ankit P. Jain, Arup Ghosh, Archana Tripathy, Harsha Gowda, Sunil K. Raghav, Bhawna Gupta

MITOCHONDRION (2020)

Article Immunology

Differential mitochondrial genome in patients with Rheumatoid Arthritis

Kumar Sagar Jaiswal, Shweta Khanna, Arup Ghosh, Prasanta Padhan, Sunil Kumar Raghav, Bhawna Gupta

Summary: The study revealed altered mtDNA sequence in immune cells of rheumatoid arthritis (RA) patients, indicating a potential role of mitochondrial genome in RA development and progression.

AUTOIMMUNITY (2021)

Article Infectious Diseases

Sequence analysis of Indian SARS-CoV-2 isolates shows a stronger interaction of mutant receptor-binding domain with ACE2

Pujarini Dash, Jyotirmayee Turuk, Santosh K. Behera, Subrata Kumar Palo, Sunil K. Raghav, Arup Ghosh, Jyotsnamayee Sabat, Sonalika Rath, Subhra Subhadra, Khokan Rana, Debdutta Bhattacharya, Srikanta Kanungo, Jaya Singh Kshatri, Bijaya Kumar Mishra, Saroj Dash, Ajay Parida, Sanghamitra Pati

Summary: This study analyzed the spike protein receptor-binding domain (RBD) sequence of SARS-CoV-2 isolates from COVID-19-positive patients in Odisha, India, and found a specific mutation leading to stronger binding affinity with human ACE2. The RBDs of all Indian isolates showed affinity for ACE2 of different species, suggesting potential wide infectivity and natural reservoirs for the virus.

INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES (2021)

Article Microbiology

Analysis of Indian SARS-CoV-2 Genomes Reveals Prevalence of D614G Mutation in Spike Protein Predicting an Increase in Interaction With TMPRSS2 and Virus Infectivity

Sunil Raghav, Arup Ghosh, Jyotirmayee Turuk, Sugandh Kumar, Atimukta Jha, Swati Madhulika, Manasi Priyadarshini, Viplov K. Biswas, P. Sushree Shyamli, Bharati Singh, Neha Singh, Deepika Singh, Ankita Datey, Kiran Avula, Shuchi Smita, Jyotsnamayee Sabat, Debdutta Bhattacharya, Jaya Singh Kshatri, Dileep Vasudevan, Amol Suryawanshi, Rupesh Dash, Shantibhushan Senapati, Tushar K. Beuria, Rajeeb Swain, Soma Chattopadhyay, Gulam Hussain Syed, Anshuman Dixit, Punit Prasad, Sanghamitra Pati, Ajay Parida

FRONTIERS IN MICROBIOLOGY (2020)

Article Medicine, Research & Experimental

CMTM6 drives cisplatin resistance by regulating Wnt signaling through the ENO-1/AKT/GSK3 beta axis

Pallavi Mohapatra, Omprakash Shriwas, Sibasish Mohanty, Arup Ghosh, Shuchi Smita, Sandeep Rai Kaushik, Rakesh Arya, Rachna Rath, Saroj Kumar Das Majumdar, Dillip Kumar Muduly, Sunil K. Raghav, Ranjan K. Nanda, Rupesh Dash

Summary: CMTM6, a top upregulated protein in chemoresistant oral squamous cell carcinoma, is associated with chemotherapy nonresponse and poorer prognosis. Its role in promoting cell apoptosis, restoring platinum drug sensitivity, and modulating the Wnt signaling pathway is crucial in overcoming therapy resistance.

JCI INSIGHT (2021)

Article Immunology

Zbtb10 transcription factor is crucial for murine cDC1 activation and cytokine secretion

Shuchi Smita, Arup Ghosh, Viplov Kumar Biswas, Abdul Ahad, Sreeparna Podder, Atimukta Jha, Kaushik Sen, Hans Acha-Orbea, Sunil K. Raghav

Summary: Zbtb10 is crucial for the immunogenic function of cDC1 and its knockdown affects cytokine and co-stimulatory gene expression, leading to alterations in CD4(+) T cell responses. Additionally, Zbtb10 KD enhances the expression of T cell anergic markers, potentially influencing T cell tolerance.

EUROPEAN JOURNAL OF IMMUNOLOGY (2021)

Article Biochemistry & Molecular Biology

Quantitative proteomics of hamster lung tissues infected with SARS-CoV-2 reveal host factors having implication in the disease pathogenesis and severity

Voddu Suresh, Varshasnata Mohanty, Kiran Avula, Arup Ghosh, Bharati Singh, Rajendra Kumar Reddy, Deepti Parida, Amol Ratnakar Suryawanshi, Sunil Kumar Raghav, Soma Chattopadhyay, Punit Prasad, Rajeeb Kumar Swain, Rupesh Dash, Ajay Parida, Gulam Hussain Syed, Shantibhusan Senapati

Summary: This study confirmed the infectivity of a local SARS-CoV-2 isolate in a hamster model, showing similar lung pathology to COVID-19 patients and other hamsters. The lung-associated pathological changes were prominent on the 4th day post-infection and mostly resolved by 14 dpi. Proteomic analysis identified 68 significantly altered proteins between infected groups, with highlighted pathways including complement and coagulation cascade, platelet activation, ferroptosis, and focal adhesion. Additionally, altered expression of pulmonary surfactant-associated proteins Sftpd and Sftpb was observed, suggesting their potential role in SARS-CoV-2 pathogenesis and disease progression.

FASEB JOURNAL (2021)

Article Biochemistry & Molecular Biology

Spatio-temporal dynamics of intra-host variability in SARS-CoV-2 genomes

Ankit K. Pathak, Gyan Prakash Mishra, Bharathram Uppili, Safal Walia, Saman Fatihi, Tahseen Abbas, Sofia Banu, Arup Ghosh, Amol Kanampalliwar, Atimukta Jha, Sana Fatma, Shifu Aggarwal, Mahesh Shanker Dhar, Robin Marwal, Venkatraman Srinivasan Radhakrishnan, Kalaiarasan Ponnusamy, Sandhya Kabra, Partha Rakshit, Rahul C. Bhoyar, Abhinav Jain, Mohit Kumar Divakar, Mohamed Imran, Mohammed Faruq, Divya Tej Sowpati, Lipi Thukral, Sunil K. Raghav, Mitali Mukerji

Summary: During the COVID-19 pandemic, genome sequencing of SARS-CoV-2 has been valuable for tracking its spread and identifying variants of concern. Intra-host single nucleotide variations (iSNVs) can capture variability within a host, and some variations have been found to become fixed in the population. Mutations in the Spike protein may affect antigenicity and immune escape. Therefore, tracking and studying iSNVs in ongoing genome surveillance programs is important for early identification of potential variants of concern.

NUCLEIC ACIDS RESEARCH (2022)

Article Biochemistry & Molecular Biology

Strategic Insights into Engineering Parameters Affecting Cell Type-Specific Uptake of DNA-Based Nanomaterials

Marianna M. Koga, Alice Comberlato, Hugo J. Rodriguez-Franco, Maartje M. C. Bastings

Summary: DNA-based nanomaterials have been studied for their stability and uptake in different cell types. This research systematically analyzes the effects of surface parameters, such as charge, coating, fluorophore types, functionalization technique, and particle concentration, on the uptake of DNA-based nanoparticles in tumor cells, macrophages, and dendritic cells. The findings highlight the importance of proper engineering and assay development when using DNA-based materials in bioengineering and future nanotherapeutic agents.

BIOMACROMOLECULES (2022)

Article Infectious Diseases

Genomic profiles of vaccine breakthrough SARS-CoV-2 strains from Odisha, India

Arup Ghosh, Safal Walia, Roma Rattan, Amol Kanampalliwar, Atimukta Jha, Shifu Aggarwal, Sana Fatma, Niyati Das, Nirupama Chayani, Punit Prasad, Sunil K. Raghav, Ajay Parida

INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES (2022)

Article Biochemistry & Molecular Biology

Long-read 16S-seq reveals nasopharynx microbial dysbiosis and enrichment of Mycobacterium and Mycoplasma in COVID-19 patients: a potential source of co-infection

Punit Prasad, Soumendu Mahapatra, Rasmita Mishra, Krushna Chandra Murmu, Shifu Aggarwal, Manisha Sethi, Priyanka Mohapatra, Arup Ghosh, Rina Yadav, Hiren Dodia, Shamima Azma Ansari, Saikat De, Deepak Singh, Amol Suryawanshi, Rupesh Dash, Shantibhushan Senapati, Tushar K. Beuria, Soma Chattopadhyay, Gulam Hussain Syed, Rajeeb Swain, Sunil K. Raghav, Ajay Parida

Summary: This study found dysbiosis and an increase in opportunistic pathogens in the nasopharyngeal microbiome of COVID-19 patients. The enrichment of Mycobacteria and Mycoplasma in symptomatic patients was strongly correlated with chest pain and fever.

MOLECULAR OMICS (2022)

No Data Available