Rapid increases in soil pH solubilise organic matter, dramatically increase denitrification potential and strongly stimulate microorganisms from the Firmicutes phylum

Base cations, K + and Ca 2+ , have contrasting effects on soil carbon, nitrogen and denitrification dynamics as pH rises

(2017) C. Anderson et al.   SOIL BIOLOGY & BIOCHEMISTRY

Nitrous Oxide Fluxes and Soil Oxygen Dynamics of Soil Treated with Cow Urine

(2017) Jen Owens et al.   SOIL SCIENCE SOCIETY OF AMERICA JOURNAL

Fermentative Bacteria Influence the Competition between Denitrifiers and DNRA Bacteria

(2017) Eveline M. van den Berg et al.   Frontiers in Microbiology

Role of nitrite in the competition between denitrification and DNRA in a chemostat enrichment culture

(2017) Eveline M. van den Berg et al.   AMB Express

Nitrous oxide emission by the non-denitrifying, nitrate ammonifier Bacillus licheniformis

(2016) Yihua Sun et al.   BMC GENOMICS

pH-dependence of organic matter solubility: Base type effects on dissolved organic C, N, P, and S in soils with contrasting mineralogy

(2016) Denis Curtin et al.   GEODERMA

Nitrous Oxide Fluxes, Soil Oxygen, and Denitrification Potential of Urine- and Non-Urine-Treated Soil under Different Irrigation Frequencies

(2016) Jen Owens et al.   JOURNAL OF ENVIRONMENTAL QUALITY

Network analysis reveals functional redundancy and keystone taxa amongst bacterial and fungal communities during organic matter decomposition in an arable soil

(2016) Samiran Banerjee et al.   SOIL BIOLOGY & BIOCHEMISTRY

Phylogenetic and functional potential links pH and N2O emissions in pasture soils

(2016) Md Sainur Samad et al.   Scientific Reports

Chemical formation of hybrid di-nitrogen calls fungal codenitrification into question

(2016) Rebecca L. Phillips et al.   Scientific Reports

Oxygen and redox potential gradients in the rhizosphere of alfalfa grown on a loamy soil

(2015) Daniel Uteau et al.   JOURNAL OF PLANT NUTRITION AND SOIL SCIENCE

Confirmation of co-denitrification in grazed grassland

(2015) Diana R. Selbie et al.   Scientific Reports

pH-driven shifts in overall and transcriptionally active denitrifiers control gaseous product stoichiometry in growth experiments with extracted bacteria from soil

(2015) Kristof Brenzinger et al.   Frontiers in Microbiology

Comparison of Oxidation Kinetics of Nitrite-Oxidizing Bacteria: Nitrite Availability as a Key Factor in Niche Differentiation

(2014) Boris Nowka et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

The nitrate-ammonifying andnosZ-carrying bacteriumBacillus viretiis a potent source and sink for nitric and nitrous oxide under high nitrate conditions

(2014) Daniel Mania et al.   ENVIRONMENTAL MICROBIOLOGY

Linking soil bacterial biodiversity and soil carbon stability

(2014) Rebecca L Mau et al.   ISME Journal

Soil pH Determines Microbial Diversity and Composition in the Park Grass Experiment

(2014) Kateryna Zhalnina et al.   MICROBIAL ECOLOGY

Impaired Reduction of N2O to N2 in Acid Soils Is Due to a Posttranscriptional Interference with the Expression of nosZ

(2014) B. Liu et al.   mBio

Waste Not, Want Not: Why Rarefying Microbiome Data Is Inadmissible

(2014) Paul J. McMurdie et al.   PLoS Computational Biology

Elucidating the microbial resuscitation cascade in biological soil crusts following a simulated rain event

(2013) Roey Angel et al.   ENVIRONMENTAL MICROBIOLOGY

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

The Importance of Dissimilatory Nitrate Reduction to Ammonium (DNRA) in the Nitrogen Cycle of Coastal Ecosystems

(2013) Anne Giblin et al.   OCEANOGRAPHY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Flooding-induced N2O emission bursts controlled by pH and nitrate in agricultural soils

(2013) Mette Hansen et al.   SOIL BIOLOGY & BIOCHEMISTRY

The unaccounted yet abundant nitrous oxide-reducing microbial community: a potential nitrous oxide sink

(2012) Christopher M Jones et al.   ISME Journal

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Regulation of denitrification at the cellular level: a clue to the understanding of N2O emissions from soils

(2012) L. R. Bakken et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Redox potential (Eh) and pH as drivers of soil/plant/microorganism systems: a transdisciplinary overview pointing to integrative opportunities for agronomy

(2012) Olivier Husson   PLANT AND SOIL

Unexpected nondenitrifier nitrous oxide reductase gene diversity and abundance in soils

(2012) R. A. Sanford et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Soil nitrate reducing processes – drivers, mechanisms for spatial variation, and significance for nitrous oxide production

(2012) Madeline Giles et al.   Frontiers in Microbiology

Redundancy and modularity in membrane-associated dissimilatory nitrate reduction in Bacillus

(2012) Kim Heylen et al.   Frontiers in Microbiology

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

(2012) Daniel McDonald et al.   GigaScience

Community-specific pH response of denitrification: experiments with cells extracted from organic soils

(2011) Peter Dörsch et al.   FEMS MICROBIOLOGY ECOLOGY

Phenotypic and genotypic heterogeneity among closely related soil-borne N2- and N2O-producing Bacillus isolates harboring the nosZ gene

(2011) Christopher M. Jones et al.   FEMS MICROBIOLOGY ECOLOGY

Development of a screening method for biogenic amine producing Bacillus spp.

(2011) Mi Chang et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

Formation of hybrid N2O and hybrid N2 due to codenitrification: First review of a barely considered process of microbially mediated N-nitrosation

(2011) Oliver Spott et al.   SOIL BIOLOGY & BIOCHEMISTRY

Denitrification is a common feature among members of the genus Bacillus

(2011) Ines Verbaendert et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Differential Growth Responses of Soil Bacterial Taxa to Carbon Substrates of Varying Chemical Recalcitrance

(2011) Katherine C. Goldfarb et al.   Frontiers in Microbiology

Changing pH shifts the microbial sourceas well as the magnitude of N2O emission from soil

(2010) Elizabeth M. Baggs et al.   BIOLOGY AND FERTILITY OF SOILS

Denitrification gene pools, transcription and kinetics of  NO, N2O and N2 production as affected by soil pH

(2010) Binbin Liu et al.   FEMS MICROBIOLOGY ECOLOGY

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

The ecological coherence of high bacterial taxonomic ranks

(2010) Laurent Philippot et al.   NATURE REVIEWS MICROBIOLOGY

Shifts in bacterial community structure associated with inputs of low molecular weight carbon compounds to soil

(2010) Kathryn G. Eilers et al.   SOIL BIOLOGY & BIOCHEMISTRY

Effect of the nitrification inhibitor dicyandiamide (DCD) on microbial communities in a pasture soil amended with bovine urine

(2010) Maureen O’Callaghan et al.   SOIL BIOLOGY & BIOCHEMISTRY

Investigating the mechanisms for the opposing pH relationships of fungal and bacterial growth in soil

(2010) Johannes Rousk et al.   SOIL BIOLOGY & BIOCHEMISTRY

Nitrifier denitrification as a distinct and significant source of nitrous oxide from soil

(2010) Dorien M. Kool et al.   SOIL BIOLOGY & BIOCHEMISTRY

Characterization of heterotrophic nitrifying bacteria with respiratory ammonification and denitrification activity – Description of Paenibacillus uliginis sp. nov., an inhabitant of fen peat soil and Paenibacillus purispatii sp. nov., isolated from a spacecraft assembly clean room

(2010) Undine Behrendt et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Spatial patterns of bacterial taxa in nature reflect ecological traits of deep branches of the 16S rRNA bacterial tree

(2009) Laurent Philippot et al.   ENVIRONMENTAL MICROBIOLOGY

Mapping field-scale spatial patterns of size and activity of the denitrifier community

(2009) Laurent Philippot et al.   ENVIRONMENTAL MICROBIOLOGY

Response of  fungal, bacterial and ureolytic communities to synthetic sheep urine deposition in a grassland soil

(2009) Brajesh K. Singh et al.   FEMS MICROBIOLOGY ECOLOGY

Aurantimonas manganoxydans, sp. nov. andAurantimonas litoralis, sp. nov.: Mn(II) Oxidizing Representatives of a Globally Distributed Clade of alpha-Proteobacteriafrom the OrderRhizobiales

(2009) Craig R. Anderson et al.   GEOMICROBIOLOGY JOURNAL

Revising the nitrogen cycle in the Peruvian oxygen minimum zone

(2009) P. Lam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA