Genes Contributing to Domestication of Rice Seed Traits and Its Global Expansion

GL3.3 , a Novel QTL Encoding a GSK3/SHAGGY-like Kinase, Epistatically Interacts with GS3 to Produce Extra-long Grains in Rice

(2018) Duo Xia et al.   Molecular Plant

TGW3 , a Major QTL that Negatively Modulates Grain Length and Weight in Rice

(2018) Jie-Zheng Ying et al.   Molecular Plant

A Novel QTL q TGW3 Encodes the GSK3/SHAGGY-Like Kinase OsGSK5/OsSK41 that Interacts with OsARF4 to Negatively Regulate Grain Size and Weight in Rice

(2018) Zejun Hu et al.   Molecular Plant

Alternative splicing of OsLG3b controls grain length and yield in japonica rice

(2018) Jianping Yu et al.   PLANT BIOTECHNOLOGY JOURNAL

Comprehensive identification of major flowering time genes and their combinations, which determined rice distribution in Northeast China

(2018) Xiufeng Li et al.   PLANT GROWTH REGULATION

Genomic adaptation of flowering-time genes during the expansion of rice cultivation area

(2018) Hironori Itoh et al.   PLANT JOURNAL

Genomic and environmental determinants and their interplay underlying phenotypic plasticity

(2018) Xin Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

GS9 acts as a transcriptional activator to regulate rice grain shape and appearance quality

(2018) Dong-Sheng Zhao et al.   Nature Communications

G-protein βγ subunits determine grain size through interaction with MADS-domain transcription factors in rice

(2018) Qian Liu et al.   Nature Communications

Molecular Mechanisms Underlying Abscisic Acid/Gibberellin Balance in the Control of Seed Dormancy and Germination in Cereals

(2018) Pham A. Tuan et al.   Frontiers in Plant Science

Divergent Hd1, Ghd7, and DTH7 Alleles Control Heading Date and Yield Potential of Japonica Rice in Northeast China

(2018) Jing Ye et al.   Frontiers in Plant Science

Estimation of loci involved in non-shattering of seeds in early rice domestication

(2017) Ryo Ishikawa et al.   GENETICA

The DTH8-Hd1 Module Mediates Day-Length-Dependent Regulation of Rice Flowering

(2017) Anping Du et al.   Molecular Plant

Natural Variation in the Promoter of GSE5 Contributes to Grain Size Diversity in Rice

(2017) Penggen Duan et al.   Molecular Plant

The control of flowering time by environmental factors

(2017) Lae-Hyeon Cho et al.   PLANT JOURNAL

ZmCCT9enhances maize adaptation to higher latitudes

(2017) Cheng Huang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Substitution mapping of QTLs controlling seed dormancy using single segment substitution lines derived from multiple cultivated rice donors in seven cropping seasons

(2017) Yuliang Zhou et al.   THEORETICAL AND APPLIED GENETICS

Transcriptional and Post-transcriptional Mechanisms Limit Heading Date 1 (Hd1) Function to Adapt Rice to High Latitudes

(2017) Daniela Goretti et al.   PLoS Genetics

Evolutionary Insights Based on SNP Haplotypes of Red Pericarp, Grain Size and Starch Synthase Genes in Wild and Cultivated Rice

(2017) Nisha Singh et al.   Frontiers in Plant Science

Whole-Genome Analysis of Candidate genes Associated with Seed Size and Weight in Sorghum bicolor Reveals Signatures of Artificial Selection and Insights into Parallel Domestication in Cereal Crops

(2017) Yongfu Tao et al.   Frontiers in Plant Science

New Genetic Loci Associated with Preharvest Sprouting and Its Evaluation Based on the Model Equation in Rice

(2017) Gi-An Lee et al.   Frontiers in Plant Science

Alternative functions of Hd1 in repressing or promoting heading are determined by Ghd7 status under long-day conditions

(2017) Zhanyi Zhang et al.   Scientific Reports

Genome-wide association mapping revealed a diverse genetic basis of seed dormancy across subpopulations in rice (Oryza sativa L.)

(2016) Risper Auma Magwa et al.   BMC GENETICS

OsGRF4controls grain shape, panicle length and seed shattering in rice

(2016) Pingyong Sun et al.   Journal of Integrative Plant Biology

OsSPL13 controls grain size in cultivated rice

(2016) Lizhen Si et al.   NATURE GENETICS

Hd18, Encoding Histone Acetylase Related to Arabidopsis FLOWERING LOCUS D, is Involved in the Control of Flowering Time in Rice

(2016) Taeko Shibaya et al.   PLANT AND CELL PHYSIOLOGY

The OsmiR396c-OsGRF4-OsGIF1 regulatory module determines grain size and yield in rice

(2016) Shuangcheng Li et al.   PLANT BIOTECHNOLOGY JOURNAL

Hd1,aCONSTANSortholog in rice, functions as anEhd1repressor through interaction with monocot-specific CCT-domain protein Ghd7

(2016) Yasue Nemoto et al.   PLANT JOURNAL

Genetic control of flowering time in rice: integration of Mendelian genetics and genomics

(2016) Kiyosumi Hori et al.   THEORETICAL AND APPLIED GENETICS

Haplotypes of the TaGS5-A1 Gene Are Associated with Thousand-Kernel Weight in Chinese Bread Wheat

(2016) Shasha Wang et al.   Frontiers in Plant Science

Genome-Wide Association Studies Reveal that Diverse Heading Date Genes Respond to Short and Long Day Lengths between Indica and Japonica Rice

(2016) Zhongmin Han et al.   Frontiers in Plant Science

Evaluation of Genetic Diversity and Development of a Core Collection of Wild Rice (Oryza rufipogon Griff.) Populations in China

(2016) Wen Liu et al.   PLoS One

Genetic architecture of variation in heading date among Asian rice accessions

(2015) Kiyosumi Hori et al.   BMC PLANT BIOLOGY

Inhibition of abscission layer formation by an interaction of two seed-shattering loci, sh4 and qSH3, in rice

(2015) Chizuru Inoue et al.   GENES & GENETIC SYSTEMS

Natural Variations in SLG7 Regulate Grain Shape in Rice

(2015) Y. Zhou et al.   GENETICS

Parallel Domestication of theHeading Date 1Gene in Cereals

(2015) Huanhuan Liu et al.   MOLECULAR BIOLOGY AND EVOLUTION

A Rare Allele of GS2 Enhances Grain Size and Grain Yield in Rice

(2015) Jiang Hu et al.   Molecular Plant

Copy number variation at the GL7 locus contributes to grain size diversity in rice

(2015) Yuexing Wang et al.   NATURE GENETICS

The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality

(2015) Shaokui Wang et al.   NATURE GENETICS

Genetic interactions between diverged alleles ofEarly heading date 1(Ehd1) andHeading date 3a(Hd3a)/ RICE FLOWERING LOCUS T1(RFT1) control differential heading and contribute to regional adaptation in rice (Oryza sativa)

(2015) Jing Zhao et al.   NEW PHYTOLOGIST

Combinations of theGhd7,Ghd8andHd1genes largely define the ecogeographical adaptation and yield potential of cultivated rice

(2015) Jia Zhang et al.   NEW PHYTOLOGIST

TaGS5-3A,a grain size gene selected during wheat improvement for larger kernel and yield

(2015) Lin Ma et al.   PLANT BIOTECHNOLOGY JOURNAL

Map-Based Cloning of qSD1-2 Identified a Gibberellin Synthesis Gene Regulating the Development of Endosperm-Imposed Dormancy in Rice

(2015) Heng Ye et al.   PLANT PHYSIOLOGY

Regulation of OsGRF4 by OsmiR396 controls grain size and yield in rice

(2015) Penggen Duan et al.   Nature Plants

Control of grain size and rice yield by GL2-mediated brassinosteroid responses

(2015) Ronghui Che et al.   Nature Plants

Identification of candidate genes, regions and markers for pre-harvest sprouting resistance in wheat (Triticum aestivum L.)

(2014) Adrian L Cabral et al.   BMC PLANT BIOLOGY

Effect of quantitative trait loci for seed shattering on abscission layer formation in Asian wild rice Oryza rufipogon

(2014) Than Myint Htun et al.   BREEDING SCIENCE

The genome sequence of African rice (Oryza glaberrima) and evidence for independent domestication

(2014) Muhua Wang et al.   NATURE GENETICS

Adaptation to the Local Environment by Modifications of the Photoperiod Response in Crops

(2014) Norihito Nakamichi   PLANT AND CELL PHYSIOLOGY

Days to heading 7, a major quantitative locus determining photoperiod sensitivity and regional adaptation in rice

(2014) He Gao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rare allele of a previously unidentified histone H4 acetyltransferase enhances grain weight, yield, and plant biomass in rice

(2014) Xian Jun Song et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Cloning of seed dormancy genes (TaSdr) associated with tolerance to pre-harvest sprouting in common wheat and development of a functional marker

(2014) Yingjun Zhang et al.   THEORETICAL AND APPLIED GENETICS

Multiple and independent origins of short seeded alleles of GS3 in rice

(2013) Noriko Takano-Kai et al.   BREEDING SCIENCE

Natural variation in Ghd7.1 plays an important role in grain yield and adaptation in rice

(2013) Wenhao Yan et al.   CELL RESEARCH

Cloning and Characterization of a Critical Regulator for Preharvest Sprouting in Wheat

(2013) S. Liu et al.   GENETICS

Natural Variation in OsPRR37 Regulates Heading Date and Contributes to Rice Cultivation at a Wide Range of Latitudes

(2013) Bon-Hyuk Koo et al.   Molecular Plant

Loss of function of the IAA-glucose hydrolase gene TGW6 enhances rice grain weight and increases yield

(2013) Ken Ishimaru et al.   NATURE GENETICS

Natural variation and artificial selection in four genes determine grain shape in rice

(2013) Li Lu et al.   NEW PHYTOLOGIST

Natural variation inEarly flowering1contributes to early flowering injaponicarice under long days

(2013) CHOON-TAK KWON et al.   PLANT CELL AND ENVIRONMENT

Hd16, a gene for casein kinase I, is involved in the control of rice flowering time by modulating the day-length response

(2013) Kiyosumi Hori et al.   PLANT JOURNAL

Natural Variation of the RICE FLOWERING LOCUS T 1 Contributes to Flowering Time Divergence in Rice

(2013) Eri Ogiso-Tanaka et al.   PLoS One

Association of functional nucleotide polymorphisms at DTH2 with the northward expansion of rice cultivation in Asia

(2013) W. Wu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Ehd4 Encodes a Novel and Oryza-Genus-Specific Regulator of Photoperiodic Flowering in Rice

(2013) He Gao et al.   PLoS Genetics

The novel quantitative trait locus GL3.1 controls rice grain size and yield by regulating Cyclin-T1;3

(2012) Peng Qi et al.   CELL RESEARCH

The Role of a Pseudo-Response Regulator Gene in Life Cycle Adaptation and Domestication of Beet

(2012) Pierre A. Pin et al.   CURRENT BIOLOGY

A Kelch Motif-Containing Serine/Threonine Protein Phosphatase Determines the Large Grain QTL Trait in Rice

(2012) Zejun Hu et al.   Journal of Integrative Plant Biology

LHD1,an Allele ofDTH8/Ghd8, Controls Late Heading Date in Common Wild Rice (Oryza rufipogon)F

(2012) Xiaodong Dai et al.   Journal of Integrative Plant Biology

A map of rice genome variation reveals the origin of cultivated rice

(2012) Xuehui Huang et al.   NATURE

Parallel domestication of the Shattering1 genes in cereals

(2012) Zhongwei Lin et al.   NATURE GENETICS

Control of grain size, shape and quality by OsSPL16 in rice

(2012) Shaokui Wang et al.   NATURE GENETICS

Natural Variation in Hd17, a Homolog of Arabidopsis ELF3 That is Involved in Rice Photoperiodic Flowering

(2012) Kazuki Matsubara et al.   PLANT AND CELL PHYSIOLOGY

Genetic Control of Seed Shattering in Rice by the APETALA2 Transcription Factor SHATTERING ABORTION1

(2012) Y. Zhou et al.   PLANT CELL

Mutation at the circadian clock gene EARLY MATURITY 8 adapts domesticated barley (Hordeum vulgare) to short growing seasons

(2012) S. Faure et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Rare allele of OsPPKL1 associated with grain length causes extra-large grain and a significant yield increase in rice

(2012) X. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Sequence polymorphisms in wild, weedy, and cultivated rice suggest seed-shattering locus sh4 played a minor role in Asian rice domestication

(2012) Yongqing Zhu et al.   Ecology and Evolution

The Same Regulatory Point Mutation Changed Seed-Dispersal Structures in Evolution and Domestication

(2011) Nicolas Arnaud et al.   CURRENT BIOLOGY

Association Between Seed Dormancy and Pericarp Color Is Controlled by a Pleiotropic Gene That Regulates Abscisic Acid and Flavonoid Synthesis in Weedy Red Rice

(2011) Xing-You Gu et al.   GENETICS

14-3-3 proteins act as intracellular receptors for rice Hd3a florigen

(2011) Ken-ichiro Taoka et al.   NATURE

Genome-wide association study of flowering time and grain yield traits in a worldwide collection of rice germplasm

(2011) Xuehui Huang et al.   NATURE GENETICS

Natural variation in GS5 plays an important role in regulating grain size and yield in rice

(2011) Yibo Li et al.   NATURE GENETICS

Heading date gene, dth3 controlled late flowering in O. Glaberrima Steud. by down-regulating Ehd1

(2011) X. F. Bian et al.   PLANT CELL REPORTS

Coincident light and clock regulation of pseudoresponse regulator protein 37 (PRR37) controls photoperiodic flowering in sorghum

(2011) R. L. Murphy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Artificial selection for a green revolution gene during japonica rice domestication

(2011) K. Asano et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Duplication and partitioning in evolution and function of homoeologous Q loci governing domestication characters in polyploid wheat

(2011) Z. Zhang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Uncovering of major genetic factors generating naturally occurring variation in heading date among Asian rice cultivars

(2011) Kaworu Ebana et al.   THEORETICAL AND APPLIED GENETICS

Mapping and characterization of seed dormancy QTLs using chromosome segment substitution lines in rice

(2011) Salem Marzougui et al.   THEORETICAL AND APPLIED GENETICS

Relationship, evolutionary fate and function of two maize co-orthologs of rice GW2 associated with kernel size and weight

(2010) Qing Li et al.   BMC PLANT BIOLOGY

Quantitative trait loci for seed dormancy in rice

(2010) Wei Li et al.   EUPHYTICA

A Major QTL, Ghd8, Plays Pleiotropic Roles in Regulating Grain Productivity, Plant Height, and Heading Date in Rice

(2010) Wen-Hao Yan et al.   Molecular Plant

A pair of floral regulators sets critical day length for Hd3a florigen expression in rice

(2010) Hironori Itoh et al.   NATURE GENETICS

Genome-wide association studies of 14 agronomic traits in rice landraces

(2010) Xuehui Huang et al.   NATURE GENETICS

DTH8 Suppresses Flowering in Rice, Influencing Plant Height and Yield Potential Simultaneously

(2010) X. Wei et al.   PLANT PHYSIOLOGY

Molecular cloning of Sdr4, a regulator involved in seed dormancy and domestication of rice

(2010) K. Sugimoto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Linking differential domain functions of the GS3 protein to natural variation of grain size in rice

(2010) H. Mao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Functional markers developed from multiple loci in GS3 for fine marker-assisted selection of grain length in rice

(2010) Chongrong Wang et al.   THEORETICAL AND APPLIED GENETICS

Identification and development of a functional marker of TaGW2 associated with grain weight in bread wheat (Triticum aestivum L.)

(2010) Zhenqi Su et al.   THEORETICAL AND APPLIED GENETICS

A gene network for long-day flowering activates RFT1 encoding a mobile flowering signal in rice

(2009) R. Komiya et al.   DEVELOPMENT

Evolutionary History of GS3 , a Gene Conferring Grain Length in Rice

(2009) Noriko Takano-Kai et al.   GENETICS

Selection on grain shattering genes and rates of rice domestication

(2009) Lin-Bin Zhang et al.   NEW PHYTOLOGIST

The qSD12 underlying gene promotes abscisic acid accumulation in early developing seeds to induce primary dormancy in rice

(2009) Xing-You Gu et al.   PLANT MOLECULAR BIOLOGY

The Role of Casein Kinase II in Flowering Time Regulation Has Diversified during Evolution

(2009) E. Ogiso et al.   PLANT PHYSIOLOGY

Molecular Aspects of Seed Dormancy

(2008) Ruth Finkelstein et al.   Annual Review of Plant Biology

Isolation and initial characterization of GW5, a major QTL associated with rice grain width and weight

(2008) Jianfeng Weng et al.   CELL RESEARCH

Hd3a and RFT1 are essential for flowering in rice

(2008) R. Komiya et al.   DEVELOPMENT

Natural variation in Ghd7 is an important regulator of heading date and yield potential in rice

(2008) Weiya Xue et al.   NATURE GENETICS

Control of rice grain-filling and yield by a gene with a potential signature of domestication

(2008) Ertao Wang et al.   NATURE GENETICS

Deletion in a gene associated with grain size increased yields during rice domestication

(2008) Ayahiko Shomura et al.   NATURE GENETICS

A triallelic system of S5 is a major regulator of the reproductive barrier and compatibility of indica-japonica hybrids in rice

(2008) J. Chen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A causal C–A mutation in the second exon of GS3 highly associated with rice grain length and validated as a functional marker

(2008) Chuchuan Fan et al.   THEORETICAL AND APPLIED GENETICS

Novel QTLs for photoperiodic flowering revealed by using reciprocal backcross inbred lines from crosses between japonica rice cultivars

(2008) K. Matsubara et al.   THEORETICAL AND APPLIED GENETICS

Molecular and Evolutionary Analysis of the Hd6 Photoperiod Sensitivity Gene Within Genus Oryza

(2008) Hiroko Yamane et al.   Rice