Endosperm-specific transcriptome analysis by applying the INTACT system

Applying the INTACT method to purify endosperm nuclei and to generate parental-specific epigenome profiles

(2017) Jordi Moreno-Romero et al.   Nature Protocols

Widespread Contamination of Arabidopsis Embryo and Endosperm Transcriptome Data Sets

(2017) Michael A. Schon et al.   PLANT CELL

Nuclear Transcriptomes at High Resolution Using Retooled INTACT

(2017) Mauricio A. Reynoso et al.   PLANT PHYSIOLOGY

Parental epigenetic asymmetry of PRC2‐mediated histone modifications in theArabidopsisendosperm

(2016) Jordi Moreno‐Romero et al.   EMBO JOURNAL

Rapid Evolution of Genomic Imprinting in Two Species of the Brassicaceae

(2016) Marcelinus R. Hatorangan et al.   PLANT CELL

Proteomic profiling of cardiac tissue by isolation of nuclei tagged in specific cell types (INTACT)

(2014) N. M. Amin et al.   DEVELOPMENT

The Functions of the Endosperm During Seed Germination

(2014) D. Yan et al.   PLANT AND CELL PHYSIOLOGY

Natural epigenetic polymorphisms lead to intraspecific variation in Arabidopsis gene imprinting

(2014) Daniela Pignatta et al.   eLife

Dynamic Expression of Imprinted Genes Associates with Maternally Controlled Nutrient Allocation during Maize Endosperm Development

(2013) M. Xin et al.   PLANT CELL

GFOLD: a generalized fold change for ranking differentially expressed genes from RNA-seq data

(2012) Jianxing Feng et al.   BIOINFORMATICS

Cell-type-specific nuclei purification from whole animals for genome-wide expression and chromatin profiling

(2012) F. A. Steiner et al.   GENOME RESEARCH

Cell type–specific genomics of Drosophila neurons

(2012) Gilbert L. Henry et al.   NUCLEIC ACIDS RESEARCH

Genomic Analysis of Parent-of-Origin Allelic Expression in Arabidopsis thaliana Seeds

(2011) Mary Gehring et al.   PLoS One

Regulation of imprinted gene expression inArabidopsisendosperm

(2011) Tzung-Fu Hsieh et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Resolution Analysis of Parent-of-Origin Allelic Expression in the Arabidopsis Endosperm

(2011) Philip Wolff et al.   PLoS Genetics

A Simple Method for Gene Expression and Chromatin Profiling of Individual Cell Types within a Tissue

(2010) Roger B. Deal et al.   DEVELOPMENTAL CELL

The INTACT method for cell type–specific gene expression and chromatin profiling in Arabidopsis thaliana

(2010) Roger B Deal et al.   Nature Protocols

Global analysis of gene activity during Arabidopsis seed development and identification of seed-specific transcription factors

(2010) B. H. Le et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

H3K27me3 Profiling of the Endosperm Implies Exclusion of Polycomb Group Protein Targeting by DNA Methylation

(2010) Isabelle Weinhofer et al.   PLoS Genetics

TopHat: discovering splice junctions with RNA-Seq

(2009) Cole Trapnell et al.   BIOINFORMATICS

Control of PHERES1 Imprinting in Arabidopsis by Direct Tandem Repeats

(2009) Corina Belle R. Villar et al.   Molecular Plant

Enzymatic, but not non-enzymatic,1O2-mediated peroxidation of polyunsaturated fatty acids forms part of the EXECUTER1-dependent stress response program in the flu mutant of Arabidopsis thaliana

(2008) Dominika Przybyla et al.   PLANT JOURNAL