Integrating network topology, gene expression data and GO annotation information for protein complex prediction

A new two-stage method for revealing missing parts of edges in protein-protein interaction networks

(2017) Wei Zhang et al.   PLoS One

A method for predicting protein complex in dynamic PPI networks

(2016) Yijia Zhang et al.   BMC BIOINFORMATICS

Global Propagation Method for Predicting Protein Function by Integrating Multiple Data Sources

(2016) Jun Meng et al.   Current Bioinformatics

Identification of dynamic protein complexes based on fruit fly optimization algorithm

(2016) Xiujuan Lei et al.   KNOWLEDGE-BASED SYSTEMS

Neighbor affinity based algorithm for discovering temporal protein complex from dynamic PPI network

(2016) Xianjun Shen et al.   METHODS

A multiobjective approach for identifying protein complexes and studying their association in multiple disorders

(2015) Sanghamitra Bandyopadhyay et al.   Algorithms for Molecular Biology

A New Method for Detecting Protein Complexes based on the Three Node Cliques

(2015) Wei Zhang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Identification of Protein Complexes Using Weighted PageRank-Nibble Algorithm and Core-Attachment Structure

(2015) Wei Peng et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Detecting Protein Complexes in Protein Interaction Networks Modeled as Gene Expression Biclusters

(2015) Eileen Marie Hanna et al.   PLoS One

Protein complex detection using interaction reliability assessment and weighted clustering coefficient

(2013) Nazar Zaki et al.   BMC BIOINFORMATICS

Protein Complex Prediction in Large Ontology Attributed Protein-Protein Interaction Networks

(2013) Yijia Zhang et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Survey: Functional Module Detection from Protein-Protein Interaction Networks

(2012) Junzhong Ji et al.   IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING

Detecting protein complexes in a PPI network: a gene ontology based multi-objective evolutionary approach

(2012) Anirban Mukhopadhyay et al.   Molecular BioSystems

Detecting overlapping protein complexes in protein-protein interaction networks

(2012) Tamás Nepusz et al.   NATURE METHODS

Identifying protein complexes in protein-protein interaction networks by using clique seeds and graph entropy

(2012) Bolin Chen et al.   PROTEOMICS

Complex discovery from weighted PPI networks

(2009) Guimei Liu et al.   BIOINFORMATICS

A core-attachment based method to detect protein complexes in PPI networks

(2009) Min Wu et al.   BMC BIOINFORMATICS

Up-to-date catalogues of yeast protein complexes

(2008) Shuye Pu et al.   NUCLEIC ACIDS RESEARCH