A Strain of an Emerging Indian Xanthomonas oryzae pv. oryzae Pathotype Defeats the Rice Bacterial Blight Resistance Gene xa13 Without Inducing a Clade III SWEET Gene and Is Nearly Identical to a Recent Thai Isolate

Virulence profiling of Xanthomonas oryzae pv. oryzae isolates, causing bacterial blight of rice in India

(2017) A. Yugander et al.   EUROPEAN JOURNAL OF PLANT PATHOLOGY

Population genomic insights into variation and evolution of Xanthomonas oryzae pv. oryzae

(2017) Samriti Midha et al.   Scientific Reports

Identification and linkage analysis of a new rice bacterial blight resistance gene from XM14, a mutant line from IR24

(2016) Constantine Busungu et al.   BREEDING SCIENCE

NCBI prokaryotic genome annotation pipeline

(2016) Tatiana Tatusova et al.   NUCLEIC ACIDS RESEARCH

Interactive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees

(2016) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Targeted promoter editing for rice resistance toXanthomonas oryzaepv.oryzaereveals differential activities forSWEET14-inducing TAL effectors

(2016) Servane Blanvillain-Baufumé et al.   PLANT BIOTECHNOLOGY JOURNAL

The broadly effective recessive resistance genexa5of rice is a virulence effector-dependent quantitative trait for bacterial blight

(2016) Sheng Huang et al.   PLANT JOURNAL

Interfering TAL effectors of Xanthomonas oryzae neutralize R-gene-mediated plant disease resistance

(2016) Zhiyuan Ji et al.   Nature Communications

AnnoTALE: bioinformatics tools for identification, annotation and nomenclature of TALEs from Xanthomonas genomic sequences

(2016) Jan Grau et al.   Scientific Reports

Effector Diversification Contributes to Xanthomonas oryzae pv. oryzae Phenotypic Adaptation in a Semi-Isolated Environment

(2016) Ian Lorenzo Quibod et al.   Scientific Reports

A host basal transcription factor is a key component for infection of rice by TALE-carrying bacteria

(2016) Meng Yuan et al.   eLife

Suppression of Xo1-Mediated Disease Resistance in Rice by a Truncated, Non-DNA-Binding TAL Effector of Xanthomonas oryzae

(2016) Andrew C. Read et al.   Frontiers in Plant Science

XA23 Is an Executor R Protein and Confers Broad-Spectrum Disease Resistance in Rice

(2015) Chunlian Wang et al.   Molecular Plant

Gene targeting by the TAL effector PthXo2 reveals cryptic resistance gene for bacterial blight of rice

(2015) Junhui Zhou et al.   PLANT JOURNAL

Identification and fine-mapping of a new resistance gene, Xa40, conferring resistance to bacterial blight races in rice (Oryza sativa L.)

(2015) Suk-Man Kim et al.   THEORETICAL AND APPLIED GENETICS

ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes

(2015) Xavier Didelot et al.   PLoS Computational Biology

MorTAL Kombat: the story of defense against TAL effectors through loss-of-susceptibility

(2015) Mathilde Hutin et al.   Frontiers in Plant Science

QueTAL: a suite of tools to classify and compare TAL effectors functionally and phylogenetically

(2015) Alvaro L. Pérez-Quintero et al.   Frontiers in Plant Science

PBHoney: identifying genomic variants via long-read discordance and interrupted mapping

(2014) Adam C English et al.   BMC BIOINFORMATICS

Code-Assisted Discovery of TAL Effector Targets in Bacterial Leaf Streak of Rice Reveals Contrast with Bacterial Blight and a Novel Susceptibility Gene

(2014) Raul A. Cernadas et al.   PLoS Pathogens

TALENoffer: genome-wide TALEN off-target prediction

(2013) Jan Grau et al.   BIOINFORMATICS

Nonhybrid, finished microbial genome assemblies from long-read SMRT sequencing data

(2013) Chen-Shan Chin et al.   NATURE METHODS

Five phylogenetically close riceSWEETgenes confer TAL effector-mediated susceptibility toXanthomonas oryzaepv.oryzae

(2013) Jana Streubel et al.   NEW PHYTOLOGIST

Pathotype and Genetic Diversity amongst Indian Isolates of Xanthomonas oryzae pv. oryzae

(2013) Deo Mishra et al.   PLoS One

Comprehensive comparative-genomic analysis of Type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes

(2012) Kira S Makarova et al.   Biology Direct

Transcription activator-like (TAL) effectors targetingOsSWEETgenes enhance virulence on diverse rice (Oryza sativa) varieties when expressed individually in a TAL effector-deficient strain ofXanthomonas oryzae

(2012) Valérie Verdier et al.   NEW PHYTOLOGIST

TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target prediction

(2012) Erin L. Doyle et al.   NUCLEIC ACIDS RESEARCH

Two New Complete Genome Sequences Offer Insight into Host and Tissue Specificity of Plant Pathogenic Xanthomonas spp.

(2011) A. J. Bogdanove et al.   JOURNAL OF BACTERIOLOGY

Genotypic and Pathotypic Diversity of Xanthomonas oryzae pv. oryzae, the Cause of Bacterial Blight of Rice in Punjab State of India

(2011) Jagjeet S. Lore et al.   JOURNAL OF PHYTOPATHOLOGY

A paralog of the MtN3/saliva family recessively confers race-specific resistance to Xanthomonas oryzae in rice

(2011) QINSONG LIU et al.   PLANT CELL AND ENVIRONMENT

Rice xa13 Recessive Resistance to Bacterial Blight Is Defeated by Induction of the Disease Susceptibility Gene Os-11N3

(2010) G. Antony et al.   PLANT CELL

progressiveMauve: Multiple Genome Alignment with Gene Gain, Loss and Rearrangement

(2010) Aaron E. Darling et al.   PLoS One

New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0

(2010) Stéphane Guindon et al.   SYSTEMATIC BIOLOGY

Introduction of bacterial blight resistance into Triguna, a high yielding, mid-early duration rice variety

(2009) Raman M. Sundaram et al.   Biotechnology Journal

Breaking the Code of DNA Binding Specificity of TAL-Type III Effectors

(2009) J. Boch et al.   SCIENCE

A Simple Cipher Governs DNA Recognition by TAL Effectors

(2009) M. J. Moscou et al.   SCIENCE

Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A

(2008) Steven L Salzberg et al.   BMC GENOMICS

Genetic and Functional Characterization of the Rice Bacterial Blight Disease Resistance Genexa5

(2008) A. S. Iyer-Pascuzzi et al.   PHYTOPATHOLOGY