Rapid Succession of Actively Transcribing Denitrifier Populations in Agricultural Soil During an Anoxic Spell

Genomics and Ecology of Novel N 2 O-Reducing Microorganisms

(2018) Sara Hallin et al.   TRENDS IN MICROBIOLOGY

A bet-hedging strategy for denitrifying bacteria curtails their release of N2O

(2018) Pawel Lycus et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Agricultural soil denitrifiers possess extensive nitrite reductase gene diversity

(2017) Sara Coyotzi et al.   ENVIRONMENTAL MICROBIOLOGY

Phenotypic and genotypic richness of denitrifiers revealed by a novel isolation strategy

(2017) Pawel Lycus et al.   ISME Journal

Uncultivated microbes in need of their own taxonomy

(2017) Konstantinos T Konstantinidis et al.   ISME Journal

Soil biochar amendment affects the diversity of nosZ transcripts: Implications for N2O formation

(2017) Johannes Harter et al.   Scientific Reports

Highly diverse nirK genes comprise two major clades that harbour ammonium-producing denitrifiers

(2016) Decleyre Helen et al.   BMC GENOMICS

Modularity of nitrogen-oxide reducing soil bacteria: linking phenotype to genotype

(2016) Constance A. Roco et al.   ENVIRONMENTAL MICROBIOLOGY

Spatially explicit estimates of N2 O emissions from croplands suggest climate mitigation opportunities from improved fertilizer management

(2016) James S. Gerber et al.   GLOBAL CHANGE BIOLOGY

Transient Accumulation of NO2- and N2O during Denitrification Explained by Assuming Cell Diversification by Stochastic Transcription of Denitrification Genes

(2016) Junaid Hassan et al.   PLoS Computational Biology

Design and evaluation of primers targeting genes encoding NO-forming nitrite reductases: implications for ecological inference of denitrifying communities

(2016) Germán Bonilla-Rosso et al.   Scientific Reports

Anoxic growth of Ensifer meliloti 1021 by N2O-reduction, a potential mitigation strategy

(2015) Emilio Bueno et al.   Frontiers in Microbiology

Intergenomic Comparisons Highlight Modularity of the Denitrification Pathway and Underpin the Importance of Community Structure for N2O Emissions

(2014) Daniel R. H. Graf et al.   PLoS One

A comprehensive aligned nifH gene database: a multipurpose tool for studies of nitrogen-fixing bacteria

(2014) John Christian Gaby et al.   Database-The Journal of Biological Databases and Curation

Strains in the genusThaueraexhibit remarkably different denitrification regulatory phenotypes

(2013) Binbin Liu et al.   ENVIRONMENTAL MICROBIOLOGY

Nitrous oxide emissions from soils: how well do we understand the processes and their controls?

(2013) K. Butterbach-Bahl et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Emission of nitrous oxide and dinitrogen by diverse earthworm families from Brazil and resolution of associated denitrifying and nitrate-dissimilating taxa

(2012) Peter S. Depkat-Jakob et al.   FEMS MICROBIOLOGY ECOLOGY

Nitrous oxide production and consumption: regulation of gene expression by gas-sensitive transcription factors

(2012) S. Spiro   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Assessing and Improving Methods Used in Operational Taxonomic Unit-Based Approaches for 16S rRNA Gene Sequence Analysis

(2011) Patrick D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Removing Noise From Pyrosequenced Amplicons

(2011) Christopher Quince et al.   BMC BIOINFORMATICS

Expression of nitrous oxide reductase in Paracoccus denitrificans is regulated by oxygen and nitric oxide through FnrP and NNR

(2011) L. Bergaust et al.   MICROBIOLOGY-SGM

Denitrification Response Patterns during the Transition to Anoxic Respiration and Posttranscriptional Effects of Suboptimal pH on Nitrogen Oxide Reductase in Paracoccus denitrificans

(2010) L. Bergaust et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Denitrification gene pools, transcription and kinetics of  NO, N2O and N2 production as affected by soil pH

(2010) Binbin Liu et al.   FEMS MICROBIOLOGY ECOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Genome-Derived Criteria for Assigning Environmental narG and nosZ Sequences to Operational Taxonomic Units of Nitrate Reducers

(2009) K. Palmer et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Evidence for the predominance of denitrification as a source of N2O in temperate agricultural soils based on isotopologue measurements

(2009) Matthew R. Opdyke et al.   GLOBAL BIOGEOCHEMICAL CYCLES

Accurate determination of microbial diversity from 454 pyrosequencing data

(2009) Christopher Quince et al.   NATURE METHODS

Transcription and activities of NOxreductases inAgrobacterium tumefaciens: the influence of nitrate, nitrite and oxygen availability

(2008) Linda Bergaust et al.   ENVIRONMENTAL MICROBIOLOGY