Multi-Method Characterization of the Human Circulating Microbiome

Identification and Characterization of Blood and Neutrophil-Associated Microbiomes in Patients with Severe Acute Pancreatitis Using Next-Generation Sequencing

(2018) Qiurong Li et al.   Frontiers in Cellular and Infection Microbiology

Transcriptome analysis in whole blood reveals increased microbial diversity in schizophrenia

(2018) Loes M. Olde Loohuis et al.   Translational Psychiatry

Blood microbiota as a potential noninvasive diagnostic biomarker for liver fibrosis in severely obese patients: Choose carefully

(2017) Zongxin Ling et al.   HEPATOLOGY

The conserved phylogeny of blood microbiome

(2017) Malay Bhattacharyya et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Dynamic changes of the respiratory microbiota and its relationship to fecal and blood microbiota in healthy young cats

(2017) Aida I. Vientós-Plotts et al.   PLoS One

The development of lower respiratory tract microbiome in mice

(2017) Nisha Singh et al.   Microbiome

Blood as a route of transmission of uterine pathogens from the gut to the uterus in cows

(2017) Soo Jin Jeon et al.   Microbiome

Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis

(2017) Adrian Tett et al.   npj Biofilms and Microbiomes

Pleomorphic bacteria-like structures in human blood represent non-living membrane vesicles and protein particles

(2017) Jan Martel et al.   Scientific Reports

Changes in blood microbiota profiles associated with liver fibrosis in obese patients: A pilot analysis

(2016) Benjamin Lelouvier et al.   HEPATOLOGY

Analysis of Lung Microbiota in Bronchoalveolar Lavage, Protected Brush and Sputum Samples from Subjects with Mild-To-Moderate Cystic Fibrosis Lung Disease

(2016) Deborah A. Hogan et al.   PLoS One

Comprehensive description of blood microbiome from healthy donors assessed by 16S targeted metagenomic sequencing

(2016) Sandrine Païssé et al.   TRANSFUSION

An investigation into blood microbiota and its potential association with Bacterial Chondronecrosis with Osteomyelitis (BCO) in Broilers

(2016) Rabindra K. Mandal et al.   Scientific Reports

Initial Characterization of the Pig Skin Bacteriome and Its Effect on In Vitro Models of Wound Healing

(2016) Matthew K. McIntyre et al.   PLoS One

Metagenomic analysis of bloodstream infections in patients with acute leukemia and therapy-induced neutropenia

(2016) P. Gyarmati et al.   Scientific Reports

On the translocation of bacteria and their lipopolysaccharides between blood and peripheral locations in chronic, inflammatory diseases: the central roles of LPS and LPS-induced cell death

(2015) Douglas B. Kell et al.   Integrative Biology

Archaea in and on the Human Body: Health Implications and Future Directions

(2015) Mor N. Lurie-Weinberger et al.   PLoS Pathogens

Viable Bacteria Associated with Red Blood Cells and Plasma in Freshly Drawn Blood Donations

(2015) Christian Damgaard et al.   PLoS One

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

Gut Dysbiosis and Detection of “Live Gut Bacteria” in Blood of Japanese Patients With Type 2 Diabetes

(2014) Junko Sato et al.   DIABETES CARE

Common Contaminants in Next-Generation Sequencing That Hinder Discovery of Low-Abundance Microbes

(2014) Martin Laurence et al.   PLoS One

Dissemination of Periodontal Pathogens in the Bloodstream after Periodontal Procedures: A Systematic Review

(2014) Anna Carolina Ratto Tempestini Horliana et al.   PLoS One

Elevated Levels of Circulating DNA in Cardiovascular Disease Patients: Metagenomic Profiling of Microbiome in the Circulation

(2014) Vasudevan Dinakaran et al.   PLoS One

Changes in the Bacterial Microbiota in Gut, Blood, and Lungs following Acute LPS Instillation into Mice Lungs

(2014) Marc A. Sze et al.   PLoS One

Kraken: ultrafast metagenomic sequence classification using exact alignments

(2014) Derrick E Wood et al.   GENOME BIOLOGY

Brief Report: In Search of a Candidate Pathogen for Giant Cell Arteritis: Sequencing-Based Characterization of the Giant Cell Arteritis Microbiome

(2014) Ami S. Bhatt et al.   Arthritis & Rheumatology

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Contrasting circulating microbiome in cardiovascular disease patients and healthy individuals

(2013) Jeyaprakash Rajendhran et al.   INTERNATIONAL JOURNAL OF CARDIOLOGY

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

Blood Microbiota Dysbiosis Is Associated with the Onset of Cardiovascular Events in a Large General Population: The D.E.S.I.R. Study

(2013) Jacques Amar et al.   PLoS One

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Microbiology of Odontogenic Bacteremia: beyond Endocarditis

(2009) N. B. Parahitiyawa et al.   CLINICAL MICROBIOLOGY REVIEWS

Bacteremia Associated With Toothbrushing and Dental Extraction

(2008) Peter B. Lockhart et al.   CIRCULATION

A diversity profile of the human skin microbiota

(2008) E. A. Grice et al.   GENOME RESEARCH

Polymerase chain reaction detection of bacterial 16S rRNA gene in human blood

(2008) Kosei Moriyama et al.   MICROBIOLOGY AND IMMUNOLOGY