Genome-wide Estrogen Receptor-α activation is sustained, not cyclical

Parallel factor ChIP provides essential internal control for quantitative differential ChIP-seq

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A quantitative mass spectrometry-based approach to monitor the dynamics of endogenous chromatin-associated protein complexes

(2018) Evangelia K. Papachristou et al.   Nature Communications

Genetic and transcriptional evolution alters cancer cell line drug response

(2018) Uri Ben-David et al.   NATURE

Predicting stimulation-dependent enhancer-promoter interactions from ChIP-Seq time course data

(2017) Tomasz Dzida et al.   PeerJ

Transcription Dynamics in Living Cells

(2016) Tineke L. Lenstra et al.   Annual Review of Biophysics

Genome-wide modeling of transcription kinetics reveals patterns of RNA production delays

(2015) Antti Honkela et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Transient Estrogen Receptor Binding and p300 Redistribution Support a Squelching Mechanism for Estradiol-Repressed Genes

(2014) Michael J. Guertin et al.   MOLECULAR ENDOCRINOLOGY

ChIP-Enrich: gene set enrichment testing for ChIP-seq data

(2014) Ryan P. Welch et al.   NUCLEIC ACIDS RESEARCH

Inference of RNA Polymerase II Transcription Dynamics from Chromatin Immunoprecipitation Time Course Data

(2014) Ciira wa Maina et al.   PLoS Computational Biology

Impact of artifact removal on ChIP quality metrics in ChIP-seq and ChIP-exo data

(2014) Thomas S. Carroll et al.   Frontiers in Genetics

Differential oestrogen receptor binding is associated with clinical outcome in breast cancer

(2012) Caryn S. Ross-Innes et al.   NATURE

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Identifying ChIP-seq enrichment using MACS

(2012) Jianxing Feng et al.   Nature Protocols

A co-ordinated interaction between CTCF and ER in breast cancer cells

(2011) Caryn S Ross-Innes et al.   BMC GENOMICS

Integrative genomics viewer

(2011) James T Robinson et al.   NATURE BIOTECHNOLOGY

Fast and accurate short read alignment with Burrows-Wheeler transform

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A hypersensitive estrogen receptor α mutation that alters dynamic protein interactions

(2009) Matthew H. Herynk et al.   BREAST CANCER RESEARCH AND TREATMENT

Genome-Wide Functional Synergy between Amplified and Mutated Genes in Human Breast Cancer

(2008) Y. Nikolsky et al.   CANCER RESEARCH

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY