Prediction of smoking by multiplex bisulfite PCR with long amplicons considering allele-specific effects on DNA methylation

Common schizophrenia alleles are enriched in mutation-intolerant genes and in regions under strong background selection

(2018) Antonio F. Pardiñas et al.   NATURE GENETICS

DNA methylation-based biomarkers and the epigenetic clock theory of ageing

(2018) Steve Horvath et al.   NATURE REVIEWS GENETICS

Identification of shared genetic variants between schizophrenia and lung cancer

(2018) Verena Zuber et al.   Scientific Reports

DNA methylation in the pathogenesis of type 2 diabetes in humans

(2018) Cajsa Davegårdh et al.   Molecular Metabolism

UMI-tools: modeling sequencing errors in Unique Molecular Identifiers to improve quantification accuracy

(2017) Tom Smith et al.   GENOME RESEARCH

Nicotine reverses hypofrontality in animal models of addiction and schizophrenia

(2017) Fani Koukouli et al.   NATURE MEDICINE

Associating cellular epigenetic models with human phenotypes

(2017) Tuuli Lappalainen et al.   NATURE REVIEWS GENETICS

Epigenome-wide discovery and evaluation of leukocyte DNA methylation markers for the detection of colorectal cancer in a screening setting

(2017) Jonathan Alexander Heiss et al.   Clinical Epigenetics

Genome-wide identification of inter-individually variable DNA methylation sites improves the efficacy of epigenetic association studies

(2017) Tsuyoshi Hachiya et al.   npj Genomic Medicine

Allele-Skewed DNA Modification in the Brain: Relevance to a Schizophrenia GWAS

(2016) Sarah A. Gagliano et al.   AMERICAN JOURNAL OF HUMAN GENETICS

A DNA methylation biomarker of alcohol consumption

(2016) C Liu et al.   MOLECULAR PSYCHIATRY

Epigenome-wide association study of body mass index and the adverse outcomes of adiposity

(2016) Simone Wahl et al.   NATURE

Quantitative comparison of DNA methylation assays for biomarker development and clinical applications

(2016) Christoph Bock et al.   NATURE BIOTECHNOLOGY

Contribution of copy number variants to schizophrenia from a genome-wide study of 41,321 subjects

(2016) Christian R Marshall et al.   NATURE GENETICS

Tobacco smoking-associated genome-wide DNA methylation changes in the EPIC study

(2016) Srikant Ambatipudi et al.   Epigenomics

Increased DNA methylation variability in type 1 diabetes across three immune effector cell types

(2016) Dirk S. Paul et al.   Nature Communications

Epigenome-wide Association Studies and the Interpretation of Disease -Omics

(2016) Ewan Birney et al.   PLoS Genetics

DNA methylation and smoking in Korean adults: epigenome-wide association study

(2016) Mi Kyeong Lee et al.   Clinical Epigenetics

Smoking-associated DNA methylation markers predict lung cancer incidence

(2016) Yan Zhang et al.   Clinical Epigenetics

Association of DNA Methylation Differences With Schizophrenia in an Epigenome-Wide Association Study

(2016) Carolina Montano et al.   JAMA Psychiatry

Quantitative and multiplexed DNA methylation analysis using long-read single-molecule real-time bisulfite sequencing (SMRT-BS)

(2015) Yao Yang et al.   BMC GENOMICS

Dynamics of smoking-induced genome-wide methylation changes with time since smoking cessation

(2015) Florence Guida et al.   HUMAN MOLECULAR GENETICS

Methylation QTLs in the developing brain and their enrichment in schizophrenia risk loci

(2015) Eilis Hannon et al.   NATURE NEUROSCIENCE

DNA methylation changes of whole blood cells in response to active smoking exposure in adults: a systematic review of DNA methylation studies

(2015) Xu Gao et al.   Clinical Epigenetics

The effect of smoking on DNA methylation of peripheral blood mononuclear cells from African American women

(2014) Meeshanthini V Dogan et al.   BMC GENOMICS

CpG Sites Associated with Cigarette Smoking: Analysis of Epigenome-Wide Data from the Sister Study

(2014) Sophia Harlid et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Biological insights from 108 schizophrenia-associated genetic loci

(2014)   NATURE

Methylome-Wide Association Study of Schizophrenia

(2014) Karolina A. Aberg et al.   JAMA Psychiatry

DNA methylation changes in the postmortem dorsolateral prefrontal cortex of patients with schizophrenia

(2014) Shusuke Numata et al.   Frontiers in Genetics

Epigenomic association analysis identifies smoking-related DNA methylation sites in African Americans

(2013) Yan V. Sun et al.   HUMAN GENETICS

Epigenome-wide association data implicate DNA methylation as an intermediary of genetic risk in rheumatoid arthritis

(2013) Yun Liu et al.   NATURE BIOTECHNOLOGY

Tobacco Smoking Leads to Extensive Genome-Wide Changes in DNA Methylation

(2013) Sonja Zeilinger et al.   PLoS One

DNA methylation age of human tissues and cell types

(2013) Steve Horvath   GENOME BIOLOGY

DNA methylation profiling in breast cancer discordant identical twins identifies DOK7 as novel epigenetic biomarker

(2012) H. Heyn et al.   CARCINOGENESIS

450K Epigenome-Wide Scan Identifies Differential DNA Methylation in Newborns Related to Maternal Smoking during Pregnancy

(2012) Bonnie R. Joubert et al.   ENVIRONMENTAL HEALTH PERSPECTIVES

Demethylation of the aryl hydrocarbon receptor repressor as a biomarker for nascent smokers

(2012) Robert A. Philibert et al.   Epigenetics

Epigenome-wide association study in the European Prospective Investigation into Cancer and Nutrition (EPIC-Turin) identifies novel genetic loci associated with smoking

(2012) Natalie S. Shenker et al.   HUMAN MOLECULAR GENETICS

Commentary: The seven plagues of epigenetic epidemiology

(2012) Bastiaan T Heijmans et al.   INTERNATIONAL JOURNAL OF EPIDEMIOLOGY

Genome-wide Methylation Profiles Reveal Quantitative Views of Human Aging Rates

(2012) Gregory Hannum et al.   MOLECULAR CELL

Comprehensive molecular characterization of human colon and rectal cancer

(2012)   NATURE

Library-free methylation sequencing with bisulfite padlock probes

(2012) Dinh Diep et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Primer3—new capabilities and interfaces

(2012) Andreas Untergasser et al.   NUCLEIC ACIDS RESEARCH

Assessing secondhand smoke exposure with reported measures

(2012) Erika Avila-Tang et al.   TOBACCO CONTROL

Bismark: a flexible aligner and methylation caller for Bisulfite-Seq applications

(2011) Felix Krueger et al.   BIOINFORMATICS

Barcoding bias in high-throughput multiplex sequencing of miRNA

(2011) S. Alon et al.   GENOME RESEARCH

Titration-free 454 sequencing using Y adapters

(2011) Zongli Zheng et al.   Nature Protocols

Allelic Skewing of DNA Methylation Is Widespread across the Genome

(2010) Leonard C. Schalkwyk et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Allele-specific methylation is prevalent and is contributed by CpG-SNPs in the human genome

(2010) R. Shoemaker et al.   GENOME RESEARCH

The Behaviour of 5-Hydroxymethylcytosine in Bisulfite Sequencing

(2010) Yun Huang et al.   PLoS One

Temporal changes of under-reporting of cigarette consumption in population-based studies

(2010) S. Gallus et al.   TOBACCO CONTROL

Targeted bisulfite sequencing reveals changes in DNA methylation associated with nuclear reprogramming

(2009) Jie Deng et al.   NATURE BIOTECHNOLOGY

Epigenomic Profiling Reveals DNA-Methylation Changes Associated with Major Psychosis

(2008) Jonathan Mill et al.   AMERICAN JOURNAL OF HUMAN GENETICS