Two herpesviral noncoding PAN RNAs are functionally homologous but do not associate with common chromatin loci

Conditional mutagenesis in vivo reveals cell type- and infection stage-specific requirements for LANA in chronic MHV68 infection

(2018) Eduardo Salinas et al.   PLoS Pathogens

Kaposi's sarcoma-associated herpesvirus polyadenylated nuclear RNA: a structural scaffold for nuclear, cytoplasmic and viral proteins

(2017) Joanna Sztuba-Solinska et al.   NUCLEIC ACIDS RESEARCH

New insights into the expression and functions of the Kaposi's sarcoma-associated herpesvirus long noncoding PAN RNA

(2016) Nicholas K. Conrad   VIRUS RESEARCH

EBV Noncoding RNA Binds Nascent RNA to Drive Host PAX5 to Viral DNA

(2015) Nara Lee et al.   CELL

Exportin-5 mediates nuclear export of SRP RNA in vertebrates

(2015) Toshihiko Takeiwa et al.   GENES TO CELLS

Interaction between ORF24 and ORF34 in the Kaposi's Sarcoma-Associated Herpesvirus Late Gene Transcription Factor Complex Is Essential for Viral Late Gene Expression

(2015) Zoe H. Davis et al.   JOURNAL OF VIROLOGY

Complete Genome Sequence of Pig-Tailed Macaque Rhadinovirus 2 and Its Evolutionary Relationship with Rhesus Macaque Rhadinovirus and Human Herpesvirus 8/Kaposi's Sarcoma-Associated Herpesvirus

(2015) A. Gregory Bruce et al.   JOURNAL OF VIROLOGY

Association of Kaposi's Sarcoma-Associated Herpesvirus ORF31 with ORF34 and ORF24 Is Critical for Late Gene Expression

(2015) Kevin Brulois et al.   JOURNAL OF VIROLOGY

Identification of Properties of the Kaposi's Sarcoma-Associated Herpesvirus Latent Origin of Replication That Are Essential for the Efficient Establishment and Maintenance of Intact Plasmids

(2014) P. Shrestha et al.   JOURNAL OF VIROLOGY

Epstein-Barr Virus Late Gene Transcription Depends on the Assembly of a Virus-Specific Preinitiation Complex

(2014) V. Aubry et al.   JOURNAL OF VIROLOGY

KSHV 2.0: A Comprehensive Annotation of the Kaposi's Sarcoma-Associated Herpesvirus Genome Using Next-Generation Sequencing Reveals Novel Genomic and Functional Features

(2014) Carolina Arias et al.   PLoS Pathogens

DNA Virus Replication Compartments

(2013) M. Schmid et al.   JOURNAL OF VIROLOGY

A Lytic Viral Long Noncoding RNA Modulates the Function of a Latent Protein

(2013) M. Campbell et al.   JOURNAL OF VIROLOGY

Regulation of Viral and Cellular Gene Expression by Kaposi's Sarcoma-Associated Herpesvirus Polyadenylated Nuclear RNA

(2013) C. C. Rossetto et al.   JOURNAL OF VIROLOGY

Stability of a Long Noncoding Viral RNA Depends on a 9-Nt Core Element at the RNA 5' End to Interact with Viral ORF57 and Cellular PABPC1

(2012) Maria J. Massimelli et al.   International Journal of Biological Sciences

CTCF Regulates Kaposi's Sarcoma-Associated Herpesvirus Latency Transcription by Nucleosome Displacement and RNA Polymerase Programming

(2012) Hyojeung Kang et al.   JOURNAL OF VIROLOGY

An integrated encyclopedia of DNA elements in the human genome

(2012)   NATURE

Formation of triple-helical structures by the 3'-end sequences of MALAT1 and MEN  noncoding RNAs

(2012) J. A. Brown et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Conservation of a Triple-Helix-Forming RNA Stability Element in Noncoding and Genomic RNAs of Diverse Viruses

(2012) Kazimierz T. Tycowski et al.   Cell Reports

KSHV PAN RNA Associates with Demethylases UTX and JMJD3 to Activate Lytic Replication through a Physical Interaction with the Virus Genome

(2012) Cyprian C. Rossetto et al.   PLoS Pathogens

Conserved Function of lincRNAs in Vertebrate Embryonic Development despite Rapid Sequence Evolution

(2011) Igor Ulitsky et al.   CELL

Protein Arginine Methyltransferase 1-directed Methylation of Kaposi Sarcoma-associated Herpesvirus Latency-associated Nuclear Antigen

(2011) Mel Campbell et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Kaposi's Sarcoma-Associated Herpesvirus Noncoding Polyadenylated Nuclear RNA Interacts with Virus- and Host Cell-Encoded Proteins and Suppresses Expression of Genes Involved in Immune Modulation

(2011) C. C. Rossetto et al.   JOURNAL OF VIROLOGY

The Forkhead Transcription Factor FOXK2 Promotes AP-1-Mediated Transcriptional Regulation

(2011) Z. Ji et al.   MOLECULAR AND CELLULAR BIOLOGY

Genomic Maps of Long Noncoding RNA Occupancy Reveal Principles of RNA-Chromatin Interactions

(2011) Ci Chu et al.   MOLECULAR CELL

Forkhead transcription factors: key players in health and disease

(2011) Bérénice A. Benayoun et al.   TRENDS IN GENETICS

A Viral Nuclear Noncoding RNA Binds Re-localized Poly(A) Binding Protein and Is Required for Late KSHV Gene Expression

(2011) Sumit Borah et al.   PLoS Pathogens

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Functional Characterization of Kaposi's Sarcoma-Associated Herpesvirus Open Reading Frame K8 by Bacterial Artificial Chromosome-Based Mutagenesis

(2010) Y. Wang et al.   JOURNAL OF VIROLOGY

Nuclear Import of Cytoplasmic Poly(A) Binding Protein Restricts Gene Expression via Hyperadenylation and Nuclear Retention of mRNA

(2010) G. R. Kumar et al.   MOLECULAR AND CELLULAR BIOLOGY

Poly(A) Tail Recognition by a Viral RNA Element Through Assembly of a Triple Helix

(2010) R. M. Mitton-Fry et al.   SCIENCE

Kcnq1ot1/Lit1 Noncoding RNA Mediates Transcriptional Silencing by Targeting to the Perinucleolar Region

(2008) F. Mohammad et al.   MOLECULAR AND CELLULAR BIOLOGY

Kcnq1ot1 Antisense Noncoding RNA Mediates Lineage-Specific Transcriptional Silencing through Chromatin-Level Regulation

(2008) Radha Raman Pandey et al.   MOLECULAR CELL

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY