Noise propagation in an integrated model of bacterial gene expression and growth

Mathematical modelling of microbes: metabolism, gene expression and growth

(2017) Hidde de Jong et al.   Journal of the Royal Society Interface

Inertial picobalance reveals fast mass fluctuations in mammalian cells

(2017) David Martínez-Martín et al.   NATURE

Generation and filtering of gene expression noise by the bacterial cell cycle

(2016) Noreen Walker et al.   BMC BIOLOGY

Overloaded and stressed: whole-cell considerations for bacterial synthetic biology

(2016) Olivier Borkowski et al.   CURRENT OPINION IN MICROBIOLOGY

Noise-driven growth rate gain in clonal cellular populations

(2016) Mikihiro Hashimoto et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantification and Classification of E. coli Proteome Utilization and Unused Protein Costs across Environments

(2016) Edward J. O’Brien et al.   PLoS Computational Biology

Cellular Growth Arrest and Persistence from Enzyme Saturation

(2016) J. Christian J. Ray et al.   PLoS Computational Biology

Evolutionary pressures on microbial metabolic strategies in the chemostat

(2016) Meike T. Wortel et al.   Scientific Reports

Single-Cell Physiology

(2015) Sattar Taheri-Araghi et al.   Annual Review of Biophysics

Connecting growth with gene expression: of noise and numbers

(2015) Vahid Shahrezaei et al.   CURRENT OPINION IN MICROBIOLOGY

How fast-growing bacteria robustly tune their ribosome concentration to approximate growth-rate maximization

(2015) Evert Bosdriesz et al.   FEBS Journal

A growth-rate composition formula for the growth of E. coli on co-utilized carbon substrates

(2015) R. Hermsen et al.   Molecular Systems Biology

Quantitative proteomic analysis reveals a simple strategy of global resource allocation in bacteria

(2015) S. Hui et al.   Molecular Systems Biology

The quantitative and condition-dependent Escherichia coli proteome

(2015) Alexander Schmidt et al.   NATURE BIOTECHNOLOGY

Expression noise facilitates the evolution of gene regulation

(2015) Luise Wolf et al.   eLife

Bacterial growth: global effects on gene expression, growth feedback and proteome partition

(2014) Stefan Klumpp et al.   CURRENT OPINION IN BIOTECHNOLOGY

Emergence of robust growth laws from optimal regulation of ribosome synthesis

(2014) M. Scott et al.   Molecular Systems Biology

Stochasticity of metabolism and growth at the single-cell level

(2014) Daniel J. Kiviet et al.   NATURE

Scaling laws governing stochastic growth and division of single bacterial cells

(2014) Srividya Iyer-Biswas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Bacterial growth laws reflect the evolutionary importance of energy efficiency

(2014) Arijit Maitra et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Noise Propagation in Synthetic Gene Circuits for Metabolic Control

(2014) Diego A. Oyarzún et al.   ACS Synthetic Biology

How Biochemical Constraints of Cellular Growth Shape Evolutionary Adaptations in Metabolism

(2013) J. Berkhout et al.   GENETICS

Shared control of gene expression in bacteria by transcription factors and global physiology of the cell

(2013) S. Berthoumieux et al.   Molecular Systems Biology

Coordination of bacterial proteome with metabolism by cyclic AMP signalling

(2013) Conghui You et al.   NATURE

Comparison and applications of label-free absolute proteome quantification methods on Escherichia coli

(2012) L. Arike et al.   Journal of Proteomics

Measuring single-cell density

(2011) W. H. Grover et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

(2010) Y. Taniguchi et al.   SCIENCE

Interdependence of Cell Growth and Gene Expression: Origins and Consequences

(2010) M. Scott et al.   SCIENCE

Growth Rate-Dependent Global Effects on Gene Expression in Bacteria

(2009) Stefan Klumpp et al.   CELL

Emergent bistability by a growth-modulating positive feedback circuit

(2009) Cheemeng Tan et al.   Nature Chemical Biology

Noise Management by Molecular Networks

(2009) Frank J. Bruggeman et al.   PLoS Computational Biology

Metabolic Control Analysis: A Tool for Designing Strategies to Manipulate Metabolic Pathways

(2008) Rafael Moreno-Sánchez et al.   JOURNAL OF BIOMEDICINE AND BIOTECHNOLOGY

Regulatory activity revealed by dynamic correlations in gene expression noise

(2008) Mary J Dunlop et al.   NATURE GENETICS

Analytical distributions for stochastic gene expression

(2008) V. Shahrezaei et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Regulatory Control and the Costs and Benefits of Biochemical Noise

(2008) Sorin Tănase-Nicola et al.   PLoS Computational Biology