4.8 Article

Rbf Activates the Myogenic Transcriptional Program to Promote Skeletal Muscle Differentiation

Journal

CELL REPORTS
Volume 26, Issue 3, Pages 702-+

Publisher

CELL PRESS
DOI: 10.1016/j.celrep.2018.12.080

Keywords

-

Categories

Funding

  1. NIH [P40OD018537, 2P40OD010949-10A1, GM93827, GM110018]
  2. Cancer Center Support Grant [P30 CA014599]
  3. American Heart Association [14POST20210010]

Ask authors/readers for more resources

The importance of the retinoblastoma tumor suppressor protein pRB in cell cycle control is well established. However, less is known about its role in differentiation during animal development. Here, we investigated the role of Rbf, the Drosophila pRB homolog, in adult skeletal muscles. We found that the depletion of Rbf severely reduced muscle growth and altered myofibrillogenesis but only minimally affected myoblast proliferation. We identified an Rbf-dependent transcriptional program in late muscle development that is distinct from the canonical role of Rbf in cell cycle control. Unexpectedly, Rbf acts as a transcriptional activator of the myogenic and metabolic genes in the growing muscles. The genomic regions bound by Rbf contained the binding sites of several factors that genetically interacted with Rbf by modulating Rbf-dependent phenotype. Thus, our results reveal a distinctive role for Rbf as a direct activator of the myogenic transcriptional program that drives late muscle differentiation.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.8
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Biochemistry & Molecular Biology

A cell atlas of adult muscle precursors uncovers early events in fibre-type divergence inDrosophila

Maria Paula Zappia, Lucia de Castro, Majd M. Ariss, Holly Jefferson, Abul B. M. M. K. Islam, Maxim Frolov

EMBO REPORTS (2020)

Article Cell Biology

Amalgam regulates the receptor tyrosine kinase pathway through Sprouty in glial cell development in the Drosophila larval brain

Majd M. Ariss, Alexander R. Terry, Abul B. M. M. K. Islam, Nissim Hay, Maxim Frolov

JOURNAL OF CELL SCIENCE (2020)

Article Biochemistry & Molecular Biology

Cell-Autonomous versus Systemic Akt Isoform Deletions Uncovered New Roles for Akt1 and Akt2 in Breast Cancer

Xinyu Chen, Majd M. Ariss, Gopalakrishnan Ramakrishnan, Veronique Nogueira, Catherine Blaha, William Putzbach, Abul B. M. M. K. Islam, Maxim V. Frolov, Nissim Hay

MOLECULAR CELL (2020)

Article Multidisciplinary Sciences

Ancestral function ofInhibitors-of-kappaB regulates Caenorhabditis elegans development

David Brena, Joan Bertran, Montserrat Porta-de-la-Riva, Yolanda Guillen, Eric Cornes, Dmytro Kukhtar, Lluis Campos-Vicens, Lierni Fernandez, Irene Pecharroman, Albert Garcia-Lopez, Abul B. M. M. K. Islam, Laura Marruecos, Anna Bigas, Julian Ceron, Lluis Espinosa

SCIENTIFIC REPORTS (2020)

Article Biochemical Research Methods

Computational engineering the binding affinity of Adalimumab monoclonal antibody for designing potential biosimilar candidate

Md Abdullah-Al-Kamran Khan, Rafeed Rahman Turjya, Abul Bashar Mir Md Khademul Islam

Summary: This study proposed a systematic in silico approach to design new variants of Adalimumab mAb with improved binding properties, resulting in one significantly improved variant out of 143 models. Six important residues were identified, and suitable mutations were applied to design significant variants, offering new insights for structure-based affinity improvements of monoclonal antibodies.

JOURNAL OF MOLECULAR GRAPHICS & MODELLING (2021)

Article Multidisciplinary Sciences

Single-cell transcriptional changes associated with drug tolerance and response to combination therapies in cancer

Alexandre F. Aissa, Abul B. M. M. K. Islam, Majd M. Ariss, Cammille C. Go, Alexandra E. Rader, Ryan D. Conrardy, Alexa M. Gajda, Carlota Rubio-Perez, Klara Valyi-Nagy, Mary Pasquinelli, Lawrence E. Feldman, Stefan J. Green, Nuria Lopez-Bigas, Maxim Frolov, Elizaveta Benevolenskaya

Summary: Tyrosine kinase inhibitors have clinical effectiveness in treating certain subsets of cancers with receptor tyrosine kinase somatic mutations, but limited duration of response and development of drug resistance are common issues. Single-cell RNA sequencing revealed multiple cancer cell subpopulations with epigenetic changes and variable therapeutic sensitivity. Overrepresented gene ontologies associated with drug tolerance include epithelial-to-mesenchymal transition, drug metabolism, and vesicle transport. Combination therapy targeting specific drug tolerant cell subpopulations shows promise in inhibiting drug resistance.

NATURE COMMUNICATIONS (2021)

Article Biochemistry & Molecular Biology

Modeling mRNA-based vaccine YFV.E1988 against yellow fever virus E-protein using immuno-informatics and reverse vaccinology approach

Nabiha Tasneem Khan, Maliha Afroj Zinnia, Abul Bashar Mir Md Khademul Islam

Summary: This study introduces an in silico designed mRNA vaccine to overcome the constraints of live-attenuated vaccines. Through prediction, simulation, and validation, the vaccine was found to have high immunogenicity and translational efficiency. Furthermore, specific T and B cell epitopes were identified that meet the criteria for an effective vaccine candidate, with high-affinity interactions between epitopes and HLA alleles.

JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS (2023)

Article Oncology

Transcriptional Repression by FoxM1 Suppresses Tumor Differentiation and Promotes Metastasis of Breast Cancer

Dragana Kopanja, Vaibhav Chand, Eilidh O'Brien, Nishit K. Mukhopadhyay, Maria P. Zappia, Abul B. M. M. K. Islam, Maxim Frolov, Bradley J. Merrill, Pradip Raychaudhuri

Summary: This study provides new insights into the critical role of the interaction between FoxM1 and Rb in the plasticity and metastasis of breast cancer cells.

CANCER RESEARCH (2022)

Article Biochemistry & Molecular Biology

Modeling of MT. P495, an mRNA-based vaccine against the phosphate-binding protein PstS1 of Mycobacterium tuberculosis

Sazzad Shahrear, Abul Bashar Mir Md Khademul Islam

Summary: This study evaluates a hypothetical tuberculosis mRNA vaccine using computational and immunoinformatics approaches. The findings suggest that the vaccine may elicit specific immune responses against Mycobacterium tuberculosis, and it serves as a reliable source for further wet-lab validation.

MOLECULAR DIVERSITY (2023)

Article Biochemistry & Molecular Biology

Deciphering the role of predicted miRNAs of polyomaviruses in carcinogenesis

Sazzad Shahrear, Maliha Afroj Zinnia, Tasnim Ahmed, Abul Bashar Mir Md. Khademul Islam

Summary: Polyomaviruses may play a significant role in carcinogenesis by targeting multiple signaling pathways in the host and turning off tumor suppression genes through miRNA-induced mechanisms to promote cell transformation.

BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE (2022)

Article Multidisciplinary Sciences

E2F regulation of the Phosphoglycerate kinase gene is functionally important in Drosophila development

Maria Paula Zappia, Yong-Jae Kwon, Anton Westacott, Isabel Liseth, Hyun Min Lee, Abul B. M. M. K. Islam, Jiyeon Kim, Maxim V. Frolov

Summary: The transcription factor E2F is responsible for controlling the expression of cell cycle genes by binding to their promoters. However, its significance in the regulation of metabolic genes is not well understood. In this study, the researchers introduced mutations in the E2F sites of five metabolic genes in fruit flies and found varying effects on E2F recruitment and gene expression, with the glycolytic gene Pgk being the most affected. Loss of E2F regulation on the Pgk gene led to decreased glycolytic flux, ATP content, and abnormal mitochondrial morphology. The study highlights the importance of E2F regulation on metabolic genes and its impact on overall development.

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2023)

Article Biochemistry & Molecular Biology

Association of transcription factor 7-like 2 rs12255372 polymorphism with susceptibility of type 2 diabetes mellitus in Bangladeshi population

Nilima Barman, Md Atiqul Haque, Mohammuddunobi Firoz, M. Abdullah Yusuf, Abul B. M. M. K. Islam

Summary: Polymorphism of TCF7L2 gene is associated with type 2 diabetes mellitus (T2DM) in the Bangladeshi population. The presence of rs12255372 (G > T) SNP in TCF7L2 increases the risk of developing T2DM. Individuals with the minor T allele have a higher likelihood of developing T2DM. Interaction with age, BMI, gender, and family history of diabetes mellitus further increases the risk.

MOLECULAR GENETICS AND GENOMICS (2023)

Article Biochemical Research Methods

Functional Annotation of Hypothetical Proteins From the Enterobacter cloacae B13 Strain and Its Association With Pathogenicity

Supantha Dey, Sazzad Shahrear, Maliha Afroj Zinnia, Ahnaf Tajwar, Abul Bashar Mir Md Khademul Islam

Summary: This study provides functional annotation of hypothetical proteins (HPs) in Enterobacter cloacae B13 strain using bioinformatics tools. They identified several essential proteins and predicted some as virulent factors, which are associated with biofilm formation, quorum sensing, and signal transduction. Better understanding of these proteins' characteristics and functions can contribute to the knowledge and control of E. cloacae.

BIOINFORMATICS AND BIOLOGY INSIGHTS (2022)

Article Multidisciplinary Sciences

Lung transcriptome of a COVID-19 patient and systems biology predictions suggest impaired surfactant production which may be druggable by surfactant therapy

Abul Bashar Mir Md Khademul Islam, Md Abdullah-Al-Kamran Khan

SCIENTIFIC REPORTS (2020)

Article Genetics & Heredity

Aberration of the modulatory functions of intronic microRNA hsa-miR-933 on its host gene ATF2 results in type II diabetes mellitus and neurodegenerative disease development

Abul Bashar Mir Md. Khademul Islam, Eusra Mohammad, Md. Abdullah-Al-Kamran Khan

HUMAN GENOMICS (2020)

No Data Available