In-depth analysis of Bacillus subtilis proteome identifies new ORFs and traces the evolutionary history of modified proteins

Serine/Threonine Protein Kinases from Bacteria, Archaea and Eukarya Share a Common Evolutionary Origin Deeply Rooted in the Tree of Life

(2018) Ivan Andreas Stancik et al.   JOURNAL OF MOLECULAR BIOLOGY

Phosphorylation of the Bacillus subtilis Replication Controller YabA Plays a Role in Regulation of Sporulation and Biofilm Formation

(2018) Tránsito García García et al.   Frontiers in Microbiology

Ancient Regulatory Role of Lysine Acetylation in Central Metabolism

(2017) Ernesto S. Nakayasu et al.   mBio

Site-specific and kinetic characterization of enzymatic and nonenzymatic protein acetylation in bacteria

(2017) Miao-Miao Wang et al.   Scientific Reports

Bacillus As Potential Probiotics: Status, Concerns, and Future Perspectives

(2017) Fouad M. F. Elshaghabee et al.   Frontiers in Microbiology

Construction and Analysis of Two Genome-Scale Deletion Libraries for Bacillus subtilis

(2017) Byoung-Mo Koo et al.   Cell Systems

KEGG: new perspectives on genomes, pathways, diseases and drugs

(2016) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

Impact of Serine/Threonine Protein Kinases on the Regulation of Sporulation in Bacillus subtilis

(2016) Frédérique Pompeo et al.   Frontiers in Microbiology

Tyrosine 601 of Bacillus subtilis DnaK Undergoes Phosphorylation and Is Crucial for Chaperone Activity and Heat Shock Survival‡

(2016) Lei Shi et al.   Frontiers in Microbiology

Temporal Regulation of the Bacillus subtilis Acetylome and Evidence for a Role of MreB Acetylation in Cell Wall Growth

(2016) Valerie J. Carabetta et al.   mSystems

Phosphoproteome dynamics mediate revival of bacterial spores

(2015) Alex Rosenberg et al.   BMC BIOLOGY

KEGG as a reference resource for gene and protein annotation

(2015) Minoru Kanehisa et al.   NUCLEIC ACIDS RESEARCH

2016 update of the PRIDE database and its related tools

(2015) Juan Antonio Vizcaíno et al.   NUCLEIC ACIDS RESEARCH

Systematic profiling of the bacterial phosphoproteome reveals bacterium-specific features of phosphorylation

(2015) Miao-Hsia Lin et al.   Science Signaling

Experimental Validation of Bacillus anthracis A16R Proteogenomics

(2015) Zhiqi Gao et al.   Scientific Reports

Systematic profiling of the bacterial phosphoproteome reveals bacterium-specific features of phosphorylation

(2015) Miao-Hsia Lin et al.   Science Signaling

Changes in the Acetylome and Succinylome of Bacillus subtilis in Response to Carbon Source

(2015) Saori Kosono et al.   PLoS One

Evolution: Dynamics of De Novo Gene Emergence

(2014) Rafik Neme et al.   CURRENT BIOLOGY

PRIME-XS, a European Infrastructure for Proteomics

(2014) Reinout Raijmakers et al.   MOLECULAR & CELLULAR PROTEOMICS

Quantitative Phosphoproteome Analysis ofBacillus subtilisReveals Novel Substrates of the Kinase PrkC and Phosphatase PrpC

(2014) Vaishnavi Ravikumar et al.   MOLECULAR & CELLULAR PROTEOMICS

Acetylome Analysis Reveals Diverse Functions of Lysine Acetylation inMycobacterium tuberculosis

(2014) Fengying Liu et al.   MOLECULAR & CELLULAR PROTEOMICS

Structural, Kinetic and Proteomic Characterization of Acetyl Phosphate-Dependent Bacterial Protein Acetylation

(2014) Misty L. Kuhn et al.   PLoS One

Proteogenomics

(2014)   PROTEOMICS

High-throughput parallel proteogenomics: A bacterial case study

(2014) Brett Chapman et al.   PROTEOMICS

Developmentally-Regulated Excision of the SPβ Prophage Reconstitutes a Gene Required for Spore Envelope Maturation in Bacillus subtilis

(2014) Kimihiro Abe et al.   PLoS Genetics

Cross-phosphorylation of bacterial serine/threonine and tyrosine protein kinases on key regulatory residues

(2014) Lei Shi et al.   Frontiers in Microbiology

Deep Coverage of theEscherichia coliProteome Enables the Assessment of False Discovery Rates in Simple Proteogenomic Experiments

(2013) Karsten Krug et al.   MOLECULAR & CELLULAR PROTEOMICS

Acetyl-Phosphate Is a Critical Determinant of Lysine Acetylation in E. coli

(2013) Brian T. Weinert et al.   MOLECULAR CELL

Bacillus subtilisserine/threonine protein kinase YabT is involved in spore development via phosphorylation of a bacterial recombinase

(2013) Vladimir Bidnenko et al.   MOLECULAR MICROBIOLOGY

Global Detection of Protein Kinase D-dependent Phosphorylation Events in Nocodazole-treated Human Cells

(2012) Mirita Franz-Wachtel et al.   MOLECULAR & CELLULAR PROTEOMICS

Condition-Dependent Transcriptome Reveals High-Level Regulatory Architecture in Bacillus subtilis

(2012) P. Nicolas et al.   SCIENCE

Control of protein function by reversible Nɛ-lysine acetylation in bacteria

(2011) Sandy Thao et al.   CURRENT OPINION IN MICROBIOLOGY

Andromeda: A Peptide Search Engine Integrated into the MaxQuant Environment

(2011) Jürgen Cox et al.   JOURNAL OF PROTEOME RESEARCH

Proteogenomic Analysis of Bacteria and Archaea: A 46 Organism Case Study

(2011) Eli Venter et al.   PLoS One

Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) Applied to Quantitative Proteomics ofBacillus subtilis

(2010) Boumediene Soufi et al.   JOURNAL OF PROTEOME RESEARCH

The Phosphoproteome of the Minimal BacteriumMycoplasma pneumoniae

(2010) Sebastian R. Schmidl et al.   MOLECULAR & CELLULAR PROTEOMICS

Bacterial protein acetylation: the dawning of a new age

(2010) Linda I. Hu et al.   MOLECULAR MICROBIOLOGY

A phylogenetically based transcriptome age index mirrors ontogenetic divergence patterns

(2010) Tomislav Domazet-Lošo et al.   NATURE

Acetylation of Metabolic Enzymes Coordinates Carbon Source Utilization and Metabolic Flux

(2010) Q. Wang et al.   SCIENCE

Systems-wide temporal proteomic profiling in glucose-starved Bacillus subtilis

(2010) Andreas Otto et al.   Nature Communications

Co-Orientation of Replication and Transcription Preserves Genome Integrity

(2010) Anjana Srivatsan et al.   PLoS Genetics

A Comprehensive Proteomics and Transcriptomics Analysis of Bacillus subtilis Salt Stress Adaptation

(2009) H. Hahne et al.   JOURNAL OF BACTERIOLOGY

A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea

(2009) Dongying Wu et al.   NATURE

Protein abundance profiling of the Escherichia coli cytosol

(2008) Yasushi Ishihama et al.   BMC GENOMICS

A Eukaryotic-like Ser/Thr Kinase Signals Bacteria to Exit Dormancy in Response to Peptidoglycan Fragments

(2008) Ishita M. Shah et al.   CELL

Biochemical and Mutational Analyses of AcuA, the Acetyltransferase Enzyme That Controls the Activity of the Acetyl Coenzyme A Synthetase (AcsA) in Bacillus subtilis

(2008) J. G. Gardner et al.   JOURNAL OF BACTERIOLOGY

Towards the development of Bacillus subtilis as a cell factory for membrane proteins and protein complexes

(2008) Jessica C Zweers et al.   Microbial Cell Factories

Lysine Acetylation Is a Highly Abundant and Evolutionarily Conserved Modification inEscherichia Coli

(2008) Junmei Zhang et al.   MOLECULAR & CELLULAR PROTEOMICS

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

(2008) Jürgen Cox et al.   NATURE BIOTECHNOLOGY

Structural Basis for the Regulation Mechanism of the Tyrosine Kinase CapB from Staphylococcus aureus

(2008) Vanesa Olivares-Illana et al.   PLOS BIOLOGY