Single-molecule imaging correlates decreasing nuclear volume with increasing TF-chromatin associations during zebrafish development

Chromatin Accessibility Landscape in Human Early Embryos and Its Association with Evolution

(2018) Lei Gao et al.   CELL

The cis-regulatory dynamics of embryonic development at single-cell resolution

(2018) Darren A. Cusanovich et al.   NATURE

Conditional control of fluorescent protein degradation by an auxin-dependent nanobody

(2018) Katrin Daniel et al.   Nature Communications

Dense Bicoid hubs accentuate binding along the morphogen gradient

(2017) Mustafa Mir et al.   GENES & DEVELOPMENT

DNA residence time is a regulatory factor of transcription repression

(2017) Karen Clauß et al.   NUCLEIC ACIDS RESEARCH

Facilitated dissociation of transcription factors from single DNA binding sites

(2017) Ramsey I. Kamar et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Competition between histone and transcription factor binding regulates the onset of transcription in zebrafish embryos

(2017) Shai R Joseph et al.   eLife

CTCF and cohesin regulate chromatin loop stability with distinct dynamics

(2017) Anders S Hansen et al.   eLife

RNA synthesis is associated with multiple TBP-chromatin binding events

(2017) Hussain A. Zaidi et al.   Scientific Reports

Single-Molecule Imaging in Living Drosophila Embryos with Reflected Light-Sheet Microscopy

(2016) Ferdinand Greiss et al.   BIOPHYSICAL JOURNAL

deepTools2: a next generation web server for deep-sequencing data analysis

(2016) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

RNA Polymerase II cluster dynamics predict mRNA output in living cells

(2016) Won-Ki Cho et al.   eLife

Pioneer Transcription Factors Target Partial DNA Motifs on Nucleosomes to Initiate Reprogramming

(2015) Abdenour Soufi et al.   CELL

Single molecule study of non-specific binding kinetics of LacI in mammalian cells

(2015) Laura Caccianini et al.   FARADAY DISCUSSIONS

Mitotic chromosome length scales in response to both cell and nuclear size

(2015) Anne-Marie Ladouceur et al.   JOURNAL OF CELL BIOLOGY

Structural basis of transcription initiation by RNA polymerase II

(2015) Sarah Sainsbury et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Single molecule study of non-specific binding kinetics of LacI in mammalian cells

(2015) Laura Caccianini et al.   FARADAY DISCUSSIONS

Single-Molecule Dynamics of Enhanceosome Assembly in Embryonic Stem Cells

(2014) Jiji Chen et al.   CELL

Sizing and shaping the nucleus: mechanisms and significance

(2014) Predrag Jevtić et al.   CURRENT OPINION IN CELL BIOLOGY

Direct measurement of transcription factor dissociation excludes a simple operator occupancy model for gene regulation

(2014) Petter Hammar et al.   NATURE GENETICS

Objective comparison of particle tracking methods

(2014) Nicolas Chenouard et al.   NATURE METHODS

Single-molecule analysis of cell surface dynamics in Caenorhabditis elegans embryos

(2014) François B Robin et al.   NATURE METHODS

Lattice light-sheet microscopy: Imaging molecules to embryos at high spatiotemporal resolution

(2014) Bi-Chang Chen et al.   SCIENCE

In vivo single-molecule imaging identifies altered dynamics of calcium channels in dystrophin-mutant C. elegans

(2014) Hong Zhan et al.   Nature Communications

The Earliest Transcribed Zygotic Genes Are Short, Newly Evolved, and Different across Species

(2014) Patricia Heyn et al.   Cell Reports

Identification of the zebrafish maternal and paternal transcriptomes

(2013) Steven A. Harvey et al.   DEVELOPMENT

Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition

(2013) Miler T. Lee et al.   NATURE

Single-molecule imaging of transcription factor binding to DNA in live mammalian cells

(2013) J Christof M Gebhardt et al.   NATURE METHODS

Pou5f1 Transcription Factor Controls Zygotic Gene Activation In Vertebrates

(2013) M. Leichsenring et al.   SCIENCE

Real-Time Dynamics of RNA Polymerase II Clustering in Live Human Cells

(2013) I. I. Cisse et al.   SCIENCE

Facilitators and Impediments of the Pluripotency Reprogramming Factors' Initial Engagement with the Genome

(2012) Abdenour Soufi et al.   CELL

TPP1 OB-Fold Domain Controls Telomere Maintenance by Recruiting Telomerase to Chromosome Ends

(2012) Franklin L. Zhong et al.   CELL

Organelle Growth Control through Limiting Pools of Cytoplasmic Components

(2012) Nathan W. Goehring et al.   CURRENT BIOLOGY

Shaping the nucleus: Factors and forces

(2012) Alison D. Walters et al.   JOURNAL OF CELLULAR BIOCHEMISTRY

A benchmark for chromatin binding measurements in live cells

(2012) Davide Mazza et al.   NUCLEIC ACIDS RESEARCH

The lac Repressor Displays Facilitated Diffusion in Living Cells

(2012) P. Hammar et al.   SCIENCE

Nuclear size regulation: from single cells to development and disease

(2012) Lisa J. Edens et al.   TRENDS IN CELL BIOLOGY

Pioneer transcription factors: establishing competence for gene expression

(2011) K. S. Zaret et al.   GENES & DEVELOPMENT

Live-cell 3D super-resolution imaging in thick biological samples

(2011) Francesca Cella Zanacchi et al.   NATURE METHODS

Targeting and imaging single biomolecules in living cells by complementation-activated light microscopy with split-fluorescent proteins

(2011) F. Pinaud et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SoxB1 transcription factors restrict organizer gene expression by repressing multiple events downstream of Wnt signalling

(2010) Y.-H. Shih et al.   DEVELOPMENT

The nucleoporin Nup188 controls passage of membrane proteins across the nuclear pore complex

(2010) Gandhi Theerthagiri et al.   JOURNAL OF CELL BIOLOGY

Emergence of a prestressed eukaryotic nucleus during cellular differentiation and development

(2010) A. Mazumder et al.   Journal of the Royal Society Interface

Fast, high-contrast imaging of animal development with scanned light sheet–based structured-illumination microscopy

(2010) Philipp J Keller et al.   NATURE METHODS

Light Sheet Microscopy for Single Molecule Tracking in Living Tissue

(2010) Jörg Gerhard Ritter et al.   PLoS One

B1 SOX Coordinate Cell Specification with Patterning and Morphogenesis in the Early Zebrafish Embryo

(2010) Yuichi Okuda et al.   PLoS Genetics

The Biology of Chromatin Remodeling Complexes

(2009) Cedric R. Clapier et al.   Annual Review of Biochemistry

Single-Molecule Microscopy Reveals Membrane Microdomain Organization of Cells in a Living Vertebrate

(2009) Marcel J.M. Schaaf et al.   BIOPHYSICAL JOURNAL

Cell-Size-Dependent Spindle Elongation in the Caenorhabditis elegans Early Embryo

(2009) Yuki Hara et al.   CURRENT BIOLOGY

Early zebrafish development: It's in the maternal genes

(2009) Elliott W Abrams et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

The maternal-to-zygotic transition: a play in two acts

(2009) W. Tadros et al.   DEVELOPMENT

Single-Molecule Approach to Molecular Biology in Living Bacterial Cells

(2008) X. Sunney Xie et al.   Annual Review of Biophysics

Highly inclined thin illumination enables clear single-molecule imaging in cells

(2008) Makio Tokunaga et al.   NATURE METHODS

Regulation of TATA-binding protein dynamics in living yeast cells

(2008) R. O. Sprouse et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA