Integrative analysis of single-cell expression data reveals distinct regulatory states in bidirectional promoters
Published 2018 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Integrative analysis of single-cell expression data reveals distinct regulatory states in bidirectional promoters
Authors
Keywords
-
Journal
Epigenetics & Chromatin
Volume 11, Issue 1, Pages -
Publisher
Springer Nature America, Inc
Online
2018-11-10
DOI
10.1186/s13072-018-0236-7
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- An accurate and robust imputation method scImpute for single-cell RNA-seq data
- (2018) Wei Vivian Li et al. Nature Communications
- Histone modifications facilitate the coexpression of bidirectional promoters in rice
- (2016) Yuan Fang et al. BMC GENOMICS
- The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery
- (2016) Hendrik G. Stunnenberg et al. CELL
- Divergent transcription and epigenetic directionality of human promoters
- (2016) Scott A. Lacadie et al. FEBS Journal
- The Determinants of Directionality in Transcriptional Initiation
- (2016) Dia N. Bagchi et al. TRENDS IN GENETICS
- Different distribution of histone modifications in genes with unidirectional and bidirectional transcription and a role of CTCF and cohesin in directing transcription
- (2015) Susanne Bornelöv et al. BMC GENOMICS
- Bidirectional Transcription Arises from Two Distinct Hubs of Transcription Factor Binding and Active Chromatin
- (2015) Benjamin S. Scruggs et al. MOLECULAR CELL
- Perspectives on Unidirectional versus Divergent Transcription
- (2015) Sascha H.C. Duttke et al. MOLECULAR CELL
- Human Gene Promoters Are Intrinsically Bidirectional
- (2015) Robin Andersson et al. MOLECULAR CELL
- Human Promoters Are Intrinsically Directional
- (2015) Sascha H.C. Duttke et al. MOLECULAR CELL
- Integrative analysis of 111 reference human epigenomes
- (2015) Anshul Kundaje et al. NATURE
- Function and information content of DNA methylation
- (2015) Dirk Schübeler NATURE
- Single-cell epigenomics: techniques and emerging applications
- (2015) Omer Schwartzman et al. NATURE REVIEWS GENETICS
- The Mediator complex: a central integrator of transcription
- (2015) Benjamin L. Allen et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Standardizing chromatin research: a simple and universal method for ChIP-seq
- (2015) Laura Arrigoni et al. NUCLEIC ACIDS RESEARCH
- Promoter-associated endogenous and exogenous small RNAs suppress human bladder cancer cell metastasis by activating p21 CIP1/WAF1 expression
- (2015) Chenghe Wang et al. TUMOR BIOLOGY
- Distribution and Maintenance of Histone H3 Lysine 36 Trimethylation in Transcribed Locus
- (2015) Henel Sein et al. PLoS One
- Argonaute-Bound Small RNAs from Promoter-Proximal RNA Polymerase II
- (2014) Jesse R. Zamudio et al. CELL
- Low-coverage single-cell mRNA sequencing reveals cellular heterogeneity and activated signaling pathways in developing cerebral cortex
- (2014) Alex A Pollen et al. NATURE BIOTECHNOLOGY
- Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers
- (2014) Leighton J Core et al. NATURE GENETICS
- Full-length RNA-seq from single cells using Smart-seq2
- (2014) Simone Picelli et al. Nature Protocols
- From single-cell to cell-pool transcriptomes: Stochasticity in gene expression and RNA splicing
- (2013) G. K. Marinov et al. GENOME RESEARCH
- Quantitative assessment of single-cell RNA-sequencing methods
- (2013) Angela R Wu et al. NATURE METHODS
- Genome-wide analysis of long noncoding RNA stability
- (2012) M. B. Clark et al. GENOME RESEARCH
- Computational inference of mRNA stability from histone modification and transcriptome profiles
- (2012) Chengyang Wang et al. NUCLEIC ACIDS RESEARCH
- RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
- (2011) Bo Li et al. BMC BIOINFORMATICS
- Regulation of chromatin by histone modifications
- (2011) Andrew J Bannister et al. CELL RESEARCH
- DNA methylation and gene expression
- (2009) Zahava Siegfried et al. Wiley Interdisciplinary Reviews-Systems Biology and Medicine
- Divergent Transcription from Active Promoters
- (2008) Amy C. Seila et al. SCIENCE
- RNA Exosome Depletion Reveals Transcription Upstream of Active Human Promoters
- (2008) Pascal Preker et al. SCIENCE
- Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters
- (2008) Leighton J. Core et al. SCIENCE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search