A Pipeline for Volume Electron Microscopy of the Caenorhabditis elegans Nervous System

A targeted 3D EM and correlative microscopy method using SEM array tomography

(2018) Agnes Burel et al.   DEVELOPMENT

The complete connectome of a learning and memory centre in an insect brain

(2017) Katharina Eichler et al.   NATURE

webKnossos: efficient online 3D data annotation for connectomics

(2017) Kevin M Boergens et al.   NATURE METHODS

Antidromic-rectifying gap junctions amplify chemical transmission at functionally mixed electrical-chemical synapses

(2017) Ping Liu et al.   Nature Communications

Ciliomotor circuitry underlying whole-body coordination of ciliary activity in the Platynereis larva

(2017) Csaba Verasztó et al.   eLife

Synaptic and peptidergic connectome of a neurosecretory center in the annelid brain

(2017) Elizabeth A Williams et al.   eLife

Reporting methods for processing and analysis of data from serial block face scanning electron microscopy

(2016) S. BORRETT et al.   JOURNAL OF MICROSCOPY

Neuroendocrine modulation sustains the C. elegans forward motor state

(2016) Maria A Lim et al.   eLife

A cellular and regulatory map of the GABAergic nervous system of C. elegans

(2016) Marie Gendrel et al.   eLife

The CNS connectome of a tadpole larva of Ciona intestinalis (L.) highlights sidedness in the brain of a chordate sibling

(2016) Kerrianne Ryan et al.   eLife

Filling the gap: adding super-resolution to array tomography for correlated ultrastructural and molecular identification of electrical synapses at theC. elegansconnectome

(2016) Sebastian Matthias Markert et al.   Neurophotonics

Global Brain Dynamics Embed the Motor Command Sequence of Caenorhabditis elegans

(2015) Saul Kato et al.   CELL

Saturated Reconstruction of a Volume of Neocortex

(2015) Narayanan Kasthuri et al.   CELL

C. elegans locomotion: small circuits, complex functions

(2015) Mei Zhen et al.   CURRENT OPINION IN NEUROBIOLOGY

Glia-derived neurons are required for sex-specific learning in C. elegans

(2015) Michele Sammut et al.   NATURE

Sensory systems: their impact on C. elegans survival

(2015) E.N. Allen et al.   NEUROSCIENCE

Pan-neuronal imaging in roamingCaenorhabditis elegans

(2015) Vivek Venkatachalam et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Whole-brain calcium imaging with cellular resolution in freely behavingCaenorhabditis elegans

(2015) Jeffrey P. Nguyen et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Cell Death Pathway Regulates Synapse Elimination through Cleavage of Gelsolin in Caenorhabditis elegans Neurons

(2015) Lingfeng Meng et al.   Cell Reports

Inter-individual stereotypy of the Platynereis larval visual connectome

(2015) Nadine Randel et al.   eLife

A cellular and regulatory map of the cholinergic nervous system of C. elegans

(2015) Laura Pereira et al.   eLife

Simultaneous whole-animal 3D imaging of neuronal activity using light-field microscopy

(2014) Robert Prevedel et al.   NATURE METHODS

Imaging ATUM ultrathin section libraries with WaferMapper: a multi-scale approach to EM reconstruction of neural circuits

(2014) Kenneth J. Hayworth et al.   Frontiers in Neural Circuits

OpenWorm: an open-science approach to modeling Caenorhabditis elegans

(2014) Balázs Szigeti et al.   Frontiers in Computational Neuroscience

Neuronal connectome of a sensory-motor circuit for visual navigation

(2014) Nadine Randel et al.   eLife

Modular Control of Glutamatergic Neuronal Identity in C. elegans by Distinct Homeodomain Proteins

(2013) Esther Serrano-Saiz et al.   CELL

System-wide Rewiring Underlies Behavioral Differences in Predatory and Bacterial-Feeding Nematodes

(2013) Daniel J. Bumbarger et al.   CELL

Attenuation of insulin signalling contributes to FSN-1-mediated regulation of synapse development

(2013) Wesley L Hung et al.   EMBO JOURNAL

The Rich Club of the C. elegans Neuronal Connectome

(2013) E. K. Towlson et al.   JOURNAL OF NEUROSCIENCE

A visual motion detection circuit suggested by Drosophila connectomics

(2013) Shin-ya Takemura et al.   NATURE

Connectomic reconstruction of the inner plexiform layer in the mouse retina

(2013) Moritz Helmstaedter et al.   NATURE

Brain-wide 3D imaging of neuronal activity in Caenorhabditis elegans with sculpted light

(2013) Tina Schrödel et al.   NATURE METHODS

Out with the old and in with the new: rapid specimen preparation procedures for electron microscopy of sectioned biological material

(2013) Kent L. McDonald   PROTOPLASMA

Behavioral plasticity, learning, and memory in C. elegans

(2012) Hiroyuki Sasakura et al.   CURRENT OPINION IN NEUROBIOLOGY

ATUM-based SEM for High-Speed Large-Volume Biological Reconstructions

(2012) R. Schalek et al.   MICROSCOPY AND MICROANALYSIS

TrakEM2 Software for Neural Circuit Reconstruction

(2012) Albert Cardona et al.   PLoS One

The Connectome of a Decision-Making Neural Network

(2012) T. A. Jarrell et al.   SCIENCE

Volume electron microscopy for neuronal circuit reconstruction

(2011) Kevin L Briggman et al.   CURRENT OPINION IN NEUROBIOLOGY

Freeze substitution in 3 hours or less

(2011) K.L. McDONALD et al.   JOURNAL OF MICROSCOPY

High-accuracy neurite reconstruction for high-throughput neuroanatomy

(2011) Moritz Helmstaedter et al.   NATURE NEUROSCIENCE

Structural Properties of the Caenorhabditis elegans Neuronal Network

(2011) Lav R. Varshney et al.   PLoS Computational Biology

As-rigid-as-possible mosaicking and serial section registration of large ssTEM datasets

(2010) S. Saalfeld et al.   BIOINFORMATICS

Understanding wiring and volume transmission

(2010) Luigi F. Agnati et al.   BRAIN RESEARCH REVIEWS

An elegant mind: Learning and memory in Caenorhabditis elegans

(2010) E. L. Ardiel et al.   LEARNING & MEMORY

CATMAID: collaborative annotation toolkit for massive amounts of image data

(2009) S. Saalfeld et al.   BIOINFORMATICS

Caenorhabditis elegans Innexins Regulate Active Zone Differentiation

(2009) E. Yeh et al.   JOURNAL OF NEUROSCIENCE

Freeze-substitution: the addition of water to polar solvents enhances the retention of structure and acts at temperatures around -60°C

(2008) C. BUSER et al.   JOURNAL OF MICROSCOPY

Serial Section Scanning Electron Microscopy of Adult Brain Tissue Using Focused Ion Beam Milling

(2008) G. Knott et al.   JOURNAL OF NEUROSCIENCE

Tannic acid-mediated osmium impregnation after freeze-substitution: A strategy to enhance membrane contrast for electron tomography

(2008) Nuria Jiménez et al.   JOURNAL OF STRUCTURAL BIOLOGY