Deep sequencing reveals persistence of cell-associated mumps vaccine virus in chronic encephalitis

Human Coronavirus OC43 Associated with Fatal Encephalitis

(2016) Sofia Morfopoulou et al.   NEW ENGLAND JOURNAL OF MEDICINE

Amino acid substitutions in the heptad repeat A and C regions of the F protein responsible for neurovirulence of measles virus Osaka-1 strain from a patient with subacute sclerosing panencephalitis

(2016) Minoru Ayata et al.   VIROLOGY

Bayesian mixture analysis for metagenomic community profiling

(2015) Sofia Morfopoulou et al.   BIOINFORMATICS

Astrovirus VA1/HMO-C: An Increasingly Recognized Neurotropic Pathogen in Immunocompromised Patients

(2015) Julianne R. Brown et al.   CLINICAL INFECTIOUS DISEASES

Human IFNAR2 deficiency: Lessons for antiviral immunity

(2015) Christopher J. A. Duncan et al.   Science Translational Medicine

High resolution identity testing of inactivated poliovirus vaccines

(2015) Edward T. Mee et al.   VACCINE

In vitro and in vivo growth alter the population dynamic and properties of a Jeryl Lynn mumps vaccine

(2015) Sarah M. Connaughton et al.   VACCINE

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Reagent and laboratory contamination can critically impact sequence-based microbiome analyses

(2014) Susannah J Salter et al.   BMC BIOLOGY

QUAST: quality assessment tool for genome assemblies

(2013) Alexey Gurevich et al.   BIOINFORMATICS

PEAR: a fast and accurate Illumina Paired-End reAd mergeR

(2013) J. Zhang et al.   BIOINFORMATICS

A program for annotating and predicting the effects of single nucleotide polymorphisms, SnpEff

(2012) Pablo Cingolani et al.   FLY

VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing

(2012) D. C. Koboldt et al.   GENOME RESEARCH

SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

(2012) Anton Bankevich et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

The innate antiviral factor APOBEC3G targets replication of measles, mumps and respiratory syncytial viruses

(2011) M. Fehrholz et al.   JOURNAL OF GENERAL VIROLOGY

Gene-Specific Contributions to Mumps Virus Neurovirulence and Neuroattenuation

(2011) C. J. Sauder et al.   JOURNAL OF VIROLOGY

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Velvet: Algorithms for de novo short read assembly using de Bruijn graphs

(2008) D. R. Zerbino et al.   GENOME RESEARCH

Mumps

(2008) Anders Hviid et al.   LANCET